Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 7.0e-237 823.5 413 100.0
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.0e-199 699.1 415 85.3
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.4e-120 436.4 371 60.9
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.4e-115 420.6 370 59.7
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 2.0e-111 406.8 362 58.3
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.5e-109 399.8 415 54.0
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.6e-108 397.1 411 54.3
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 8.1e-108 394.8 415 53.0
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 1.4e-107 394.0 415 53.0
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.8e-107 393.7 405 55.1
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.3e-107 393.3 356 56.5
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 2.3e-107 393.3 418 53.6
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 3.1e-107 392.9 414 53.1
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 8.9e-107 391.3 374 55.9
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.6e-106 389.8 415 53.3
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.4e-106 389.0 416 51.9
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 4.4e-106 389.0 415 52.5
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.7e-105 387.1 372 54.6
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 3.7e-105 386.0 373 54.7
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 6.4e-105 385.2 415 52.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 6.4e-105 385.2 410 53.4
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.3e-105 384.8 417 50.8
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 8.3e-105 384.8 410 53.7
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.1e-104 384.4 415 52.8
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.1e-104 384.4 416 52.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.4e-104 384.0 404 52.7
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 2.4e-104 383.3 373 54.7
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 5.4e-104 382.1 407 52.1
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.4e-104 382.1 414 52.7
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 7.1e-104 381.7 375 54.4
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 7.1e-104 381.7 412 53.9
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 9.2e-104 381.3 412 52.2
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.6e-103 380.6 410 53.2
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.6e-103 380.6 404 52.5
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 2.7e-103 379.8 408 52.7
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 2.7e-103 379.8 416 52.4
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.5e-103 379.4 414 51.4
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.6e-103 379.0 403 52.1
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 6.0e-103 378.6 414 51.9
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.0e-102 377.9 414 51.2
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.0e-102 377.9 416 51.7
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.0e-102 377.9 396 52.5
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 1.7e-102 377.1 373 54.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.7e-102 377.1 408 52.5
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 1.7e-102 377.1 373 53.9
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.7e-102 377.1 419 50.8
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.7e-102 377.1 414 52.2
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 3.0e-102 376.3 387 54.0
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 3.0e-102 376.3 408 51.2
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.9e-102 375.9 417 50.6
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 5.1e-102 375.6 374 54.0
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 5.1e-102 375.6 414 51.9
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.1e-102 375.6 412 51.5
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 8.6e-102 374.8 397 53.1
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 8.6e-102 374.8 377 54.9
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 8.6e-102 374.8 377 54.6
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 8.6e-102 374.8 430 52.1
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.1e-101 374.4 399 51.1
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.5e-101 374.0 369 53.7
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.5e-101 374.0 406 52.2
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.5e-101 374.0 397 51.9
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 1.5e-101 374.0 406 51.2
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.5e-101 374.0 410 52.0
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.9e-101 373.6 408 52.2
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.9e-101 373.6 357 54.3
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.5e-101 373.2 397 53.1
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.5e-101 373.2 412 51.2
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 2.5e-101 373.2 412 51.5
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 3.3e-101 372.9 413 50.8
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 4.3e-101 372.5 374 53.2
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 5.6e-101 372.1 374 53.2
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.5e-101 371.3 412 50.2
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.2e-100 370.9 416 50.5
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 1.2e-100 370.9 415 51.6
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.2e-100 370.9 412 51.0
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.6e-100 370.5 410 52.2
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 3.6e-100 369.4 418 51.0
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.2e-100 368.6 416 51.2
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 6.2e-100 368.6 410 50.7
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 6.2e-100 368.6 415 50.6
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 6.2e-100 368.6 419 51.3
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 1.4e-99 367.5 416 50.2
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.8e-99 367.1 460 47.0
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.8e-99 367.1 414 51.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.8e-99 367.1 410 51.2
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.8e-99 367.1 415 50.1
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 8.9e-99 364.8 405 50.1
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.6e-98 363.2 418 49.3
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 3.4e-98 362.8 418 50.0
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 7.6e-98 361.7 403 49.6
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 7.6e-98 361.7 406 52.0
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 9.9e-98 361.3 419 48.9
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.3e-97 360.9 408 50.2
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.7e-97 360.5 408 49.8
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 3.7e-97 359.4 410 49.0
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 3.7e-97 359.4 410 49.0
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 3.7e-97 359.4 410 49.0
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.4e-97 358.6 440 48.6
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 8.4e-97 358.2 414 48.3
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.1e-96 357.8 414 48.6
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.4e-96 357.5 410 49.3
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.9e-96 357.1 407 48.6
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.9e-96 357.1 442 48.6
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.2e-95 354.4 417 48.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.7e-95 353.2 415 48.7
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 4.6e-95 352.4 322 57.5
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 6.0e-95 352.1 417 48.2
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 7.8e-95 351.7 420 48.3
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 8.6e-94 348.2 414 48.8
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 1.9e-93 347.1 414 48.8
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 4.3e-93 345.9 414 48.8
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 4.3e-93 345.9 418 48.3
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 3.6e-92 342.8 354 52.0
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.1e-91 341.3 350 52.3
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 3.1e-91 339.7 418 48.8
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.3e-89 334.3 436 46.3
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.1e-85 321.2 379 49.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.6e-84 317.4 512 40.2
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.1e-59 235.0 261 51.0
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 2.7e-47 193.7 228 47.4
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 2.8e-44 183.7 227 45.8
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.1e-40 171.8 179 49.2
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.4e-40 171.4 179 49.2
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.5e-32 144.8 166 49.4
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.0e-29 134.4 149 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 5.9e-26 122.9 364 29.9
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.2e-24 116.7 121 57.9
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 7.7e-18 95.9 133 40.6
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.1e-16 92.0 120 43.3
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.9e-16 91.3 59 76.3
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 3.2e-16 90.5 95 49.5
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 9.8e-13 79.0 117 41.9
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 9.5e-08 62.4 55 54.5
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 4.7e-07 60.1 47 57.4


User provided reference genes

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