Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 3.1e-84 315.1 160 100.0
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 3.6e-48 195.3 104 90.4
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 2.5e-41 172.6 104 79.8
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 1.7e-37 159.8 104 73.1
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 6.4e-37 157.9 104 71.2
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 1.4e-36 156.8 104 70.2
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 5.4e-36 154.8 104 70.2
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 5.4e-36 154.8 104 70.2
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 7.1e-36 154.5 109 67.9
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 7.1e-36 154.5 104 69.2
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 9.3e-36 154.1 104 71.2
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 9.3e-36 154.1 104 71.2
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 9.3e-36 154.1 104 70.2
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 1.2e-35 153.7 103 69.9
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 1.6e-35 153.3 104 69.2
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 1.6e-35 153.3 104 71.2
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.6e-35 153.3 103 69.9
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 1.6e-35 153.3 104 70.2
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 1.6e-35 153.3 104 69.2
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 2.1e-35 152.9 104 69.2
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 2.1e-35 152.9 104 67.3
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 2.7e-35 152.5 104 69.2
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 2.7e-35 152.5 104 69.2
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.7e-35 152.5 104 69.2
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 3.5e-35 152.1 130 60.0
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 4.6e-35 151.8 104 69.2
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 4.6e-35 151.8 104 69.2
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 4.6e-35 151.8 104 68.3
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 4.6e-35 151.8 104 69.2
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 68.3
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 69.2
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 69.2
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 70.2
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 70.2
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 6.0e-35 151.4 104 69.2
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 7.8e-35 151.0 104 68.3
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 7.8e-35 151.0 104 69.2
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 7.8e-35 151.0 104 68.3
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 7.8e-35 151.0 104 68.3
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 7.8e-35 151.0 104 69.2
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 1.0e-34 150.6 104 68.3
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 1.0e-34 150.6 104 69.2
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 1.0e-34 150.6 104 68.3
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 1.0e-34 150.6 104 68.3
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 1.0e-34 150.6 104 67.3
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 1.0e-34 150.6 107 66.4
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 1.3e-34 150.2 104 69.2
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 1.3e-34 150.2 104 68.3
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.3e-34 150.2 128 58.6
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 1.7e-34 149.8 104 67.3
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.7e-34 149.8 104 69.2
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 1.7e-34 149.8 104 68.3
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.7e-34 149.8 104 68.3
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 66.3
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 2.3e-34 149.4 104 68.3
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 3.0e-34 149.1 104 69.2
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 3.0e-34 149.1 104 68.3
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 3.0e-34 149.1 104 68.3
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.9e-34 148.7 104 67.3
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.9e-34 148.7 104 67.3
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 3.9e-34 148.7 104 68.3
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 3.9e-34 148.7 104 67.3
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 3.9e-34 148.7 104 67.3
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 70.2
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 70.2
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 67.3
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 66.3
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 65.4
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 5.1e-34 148.3 104 66.3
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 6.6e-34 147.9 104 67.3
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 6.6e-34 147.9 104 68.3
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 6.6e-34 147.9 104 69.2
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 6.6e-34 147.9 104 69.2
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 6.6e-34 147.9 104 67.3
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 68.3
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 69.2
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 68.3
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 70.2
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 67.3
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 8.7e-34 147.5 104 66.3
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 1.1e-33 147.1 104 66.3
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.1e-33 147.1 104 65.4
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.1e-33 147.1 104 65.4
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 1.1e-33 147.1 104 65.4
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 1.1e-33 147.1 104 67.3
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.5e-33 146.7 104 67.3
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 1.5e-33 146.7 104 67.3
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 1.9e-33 146.4 104 70.2
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 1.9e-33 146.4 110 65.5
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 1.9e-33 146.4 104 68.3
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 2.5e-33 146.0 104 66.3
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 3.3e-33 145.6 104 66.3
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 3.3e-33 145.6 104 66.3
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 3.3e-33 145.6 104 69.2
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 3.3e-33 145.6 104 66.3
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 3.3e-33 145.6 104 66.3
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 4.3e-33 145.2 105 67.6
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 5.6e-33 144.8 104 67.3
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 5.6e-33 144.8 104 67.3
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 5.6e-33 144.8 104 66.3
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 5.6e-33 144.8 114 61.4
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 5.6e-33 144.8 114 63.2
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 5.6e-33 144.8 104 64.4
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 7.3e-33 144.4 104 65.4
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 7.3e-33 144.4 104 67.3
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 7.3e-33 144.4 106 67.9
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 9.6e-33 144.1 104 65.4
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 1.6e-32 143.3 104 63.5
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 2.8e-32 142.5 104 66.3
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 3.6e-32 142.1 105 65.7
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 3.6e-32 142.1 104 68.3
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 8.1e-32 141.0 104 65.4
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 1.4e-31 140.2 104 62.5
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 5.3e-31 138.3 130 56.2
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 2.9e-29 132.5 78 76.9
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 4.9e-29 131.7 130 52.3
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 8.4e-29 131.0 105 62.9
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 1.6e-27 126.7 88 70.5
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 3.1e-23 112.5 91 63.7
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.0e-23 112.1 76 75.0
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.8e-22 108.2 76 73.7
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 8.4e-21 104.4 104 52.9
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 1.5e-17 93.6 59 71.2
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 1.5e-17 93.6 83 48.2
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 5.6e-17 91.7 75 50.7
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 1.3e-16 90.5 81 58.0
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.3e-13 80.5 58 65.5
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 1.7e-13 80.1 57 68.4
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 1.7e-13 80.1 57 66.7
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 4.3e-09 65.5 56 55.4
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 7.4e-09 64.7 56 57.1
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 4.8e-08 62.0 53 54.7
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.2e-06 57.4 53 58.5


User provided reference genes

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