Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.5e-239 832.0 523 100.0
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.2e-161 573.9 530 73.0
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.8e-67 261.2 419 53.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.4e-61 241.5 447 47.9
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 3.9e-59 233.4 406 41.4
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 7.4e-58 229.2 423 43.0
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 7.4e-58 229.2 419 39.1
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 9.7e-58 228.8 469 30.9
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.2e-57 227.6 470 30.6
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 2.8e-57 227.3 406 33.5
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 2.8e-57 227.3 401 51.9
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 4.8e-57 226.5 399 52.6
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.1e-56 225.3 452 40.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.4e-56 224.9 395 42.5
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.4e-56 224.9 428 40.2
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.1e-56 223.8 414 32.4
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 4.1e-56 223.4 414 47.6
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 4.1e-56 223.4 408 32.8
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.0e-54 218.8 390 32.6
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.0e-54 218.8 393 40.7
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 2.2e-54 217.6 438 48.6
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.9e-54 217.2 407 32.7
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.9e-54 217.2 393 31.8
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 3.8e-54 216.9 417 43.2
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 6.5e-54 216.1 391 41.9
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.1e-53 215.3 391 43.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.1e-53 215.3 391 41.9
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.1e-53 215.3 406 31.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.4e-53 214.9 408 50.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.9e-53 214.5 417 49.2
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 4.2e-53 213.4 431 38.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 4.2e-53 213.4 406 31.0
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 7.2e-53 212.6 409 30.8
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 9.4e-53 212.2 430 31.9
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.2e-52 211.8 414 31.2
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.6e-52 211.5 391 42.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 2.7e-52 210.7 406 42.9
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.6e-52 210.3 430 31.4
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 6.1e-52 209.5 408 40.9
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.4e-51 208.4 406 38.7
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 6.7e-51 206.1 425 30.1
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 6.7e-51 206.1 431 29.5
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 8.8e-51 205.7 388 39.7
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 8.8e-51 205.7 409 31.3
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 2.0e-50 204.5 432 40.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 2.6e-50 204.1 422 29.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.7e-49 201.4 406 35.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 2.8e-49 200.7 406 28.8
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 3.7e-49 200.3 410 39.8
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 3.7e-49 200.3 423 48.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 4.8e-49 199.9 406 28.8
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.8e-49 199.9 414 39.1
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 8.2e-49 199.1 421 45.4
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.4e-48 198.4 410 44.4
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.4e-48 198.4 425 31.8
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.8e-48 198.0 392 42.1
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 1.8e-48 198.0 406 28.6
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 2.4e-48 197.6 393 43.8
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 2.4e-48 197.6 404 41.3
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.4e-48 197.6 392 40.8
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 3.1e-48 197.2 392 42.3
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 3.1e-48 197.2 392 40.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 3.1e-48 197.2 392 43.6
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.1e-48 197.2 394 37.3
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 4.1e-48 196.8 404 39.9
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 4.1e-48 196.8 430 36.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 7.0e-48 196.1 404 45.5
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 7.0e-48 196.1 417 45.1
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 9.1e-48 195.7 419 35.6
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 9.1e-48 195.7 425 36.0
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.2e-47 195.3 392 40.3
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.2e-47 195.3 392 41.3
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 1.5e-47 194.9 406 36.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 2.0e-47 194.5 404 41.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.5e-47 193.7 391 45.8
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.5e-47 193.4 392 41.6
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 5.9e-47 193.0 419 33.4
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 1.0e-46 192.2 405 35.6
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.7e-46 191.4 391 47.1
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.8e-46 190.3 393 45.0
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 5.0e-46 189.9 406 42.4
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 6.5e-46 189.5 417 47.2
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.1e-45 188.7 420 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.4e-45 188.3 419 44.4
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 9.4e-45 185.7 404 41.8
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-44 185.3 400 29.5
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.0e-43 182.2 407 30.0
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 6.7e-43 179.5 419 29.1
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 8.8e-43 179.1 392 28.1
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.5e-42 178.3 426 27.7
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.7e-41 174.9 431 40.1
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.2e-41 174.5 461 26.5
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.8e-41 174.1 384 43.2
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.4e-40 171.8 397 39.0
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.0e-39 167.9 252 35.3
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 5.9e-39 166.4 371 41.8
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.0e-38 165.6 237 35.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.1e-36 156.4 381 27.6
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 3.0e-35 154.1 260 33.5
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 2.6e-34 151.0 250 30.8
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 2.2e-33 147.9 225 34.2
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 4.8e-33 146.7 423 27.0
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.4e-32 145.2 353 32.3
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.8e-32 144.8 300 36.0
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 6.8e-27 126.3 272 50.4
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-26 125.6 308 41.6
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.2e-25 121.3 237 30.4
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 5.0e-22 110.2 309 27.2
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.4e-18 97.1 144 34.7
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 3.7e-17 94.0 246 43.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.8e-16 91.7 228 26.8
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.0e-15 88.2 70 54.3
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 7.8e-15 86.3 328 22.3
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.5e-13 81.3 98 38.8
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 4.3e-13 80.5 83 41.0
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.6e-12 78.6 70 51.4
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.8e-12 77.8 70 51.4
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.4e-11 75.5 70 50.0
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 1.2e-10 72.4 96 34.4
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 2.9e-09 67.8 114 30.7
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.6e-07 62.0 212 49.1
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 7.8e-07 59.7 45 57.8
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.3e-06 58.2 110 33.6
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.0e-06 57.0 170 26.5


User provided reference genes

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