Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 0.0e+00 1286.9 763 100.0
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.0e-176 623.6 776 59.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.9e-171 607.1 775 57.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.1e-170 603.6 787 59.3
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.4e-169 600.9 780 56.4
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.3e-169 600.1 777 56.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.5e-168 597.4 772 55.6
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 3.7e-167 592.8 775 55.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 8.3e-167 591.7 659 50.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.4e-166 590.9 773 57.1
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.4e-166 590.9 773 57.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.6e-165 587.4 774 55.3
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.9e-165 585.5 766 55.6
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 7.8e-165 585.1 774 55.3
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.5e-163 580.1 775 54.6
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.0e-162 575.1 774 58.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.0e-161 572.8 774 57.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.0e-161 572.8 775 58.1
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.9e-161 571.6 775 57.9
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 8.9e-161 571.6 777 54.8
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-160 571.2 772 55.8
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.0e-160 570.5 663 49.2
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.4e-160 569.3 773 54.6
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 7.5e-160 568.5 771 55.5
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.2e-159 567.0 773 55.9
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 4.9e-159 565.8 658 50.5
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 8.3e-159 565.1 775 57.3
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 8.3e-159 565.1 657 50.1
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.4e-158 564.3 770 56.1
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.4e-158 563.5 775 55.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.2e-157 561.2 773 55.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.2e-157 561.2 795 52.5
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.6e-157 560.8 775 57.2
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.7e-157 560.1 807 52.0
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.7e-157 560.1 768 54.7
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 4.6e-157 559.3 773 54.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 4.6e-157 559.3 774 54.0
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 7.8e-157 558.5 773 56.1
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.3e-156 557.8 780 54.2
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.7e-156 557.4 771 56.9
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.0e-156 556.6 780 54.1
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.0e-156 556.6 784 53.6
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.9e-156 556.2 777 53.9
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.0e-156 555.8 772 54.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 5.0e-156 555.8 772 55.3
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 6.6e-156 555.4 783 53.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.6e-156 555.4 658 49.4
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 8.6e-156 555.1 775 53.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.1e-155 554.7 769 54.4
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.5e-155 554.3 773 55.6
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.5e-155 554.3 773 54.3
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-155 553.9 777 53.8
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 3.3e-155 553.1 803 53.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 4.3e-155 552.7 657 48.7
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.6e-155 552.4 769 54.4
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 7.3e-155 552.0 774 55.4
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 9.5e-155 551.6 774 55.8
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 2.1e-154 550.4 796 52.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.1e-154 550.4 773 54.9
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 2.8e-154 550.1 796 53.5
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.6e-154 549.7 772 55.8
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 3.6e-154 549.7 776 55.2
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.6e-154 549.7 773 54.6
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 4.7e-154 549.3 773 55.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 8.1e-154 548.5 657 48.2
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.1e-153 548.1 779 53.8
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-153 547.7 773 55.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 3.1e-153 546.6 770 54.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.0e-153 546.2 784 53.7
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 4.0e-153 546.2 773 54.9
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 4.0e-153 546.2 773 54.7
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 5.2e-153 545.8 774 55.4
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.5e-152 544.3 773 54.1
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.5e-152 544.3 807 42.0
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.0e-152 543.9 771 54.7
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 2.6e-152 543.5 774 54.5
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.6e-152 543.5 777 53.9
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 5.8e-152 542.3 801 52.9
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 7.5e-152 542.0 786 54.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 9.8e-152 541.6 774 53.5
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.3e-151 541.2 774 55.6
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.7e-151 540.8 798 46.4
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.7e-151 540.8 684 46.5
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.9e-151 540.0 777 54.4
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 3.7e-151 539.7 797 52.6
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 8.3e-151 538.5 782 53.6
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.1e-150 536.2 811 43.9
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.2e-149 534.6 840 51.4
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 7.8e-149 531.9 659 49.5
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.3e-148 531.2 766 53.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.7e-148 530.8 787 54.5
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 6.6e-148 528.9 771 54.3
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 8.6e-148 528.5 616 48.7
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.5e-147 526.9 771 54.3
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 7.3e-147 525.4 774 54.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.4e-145 521.2 859 51.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 5.8e-144 515.8 771 53.6
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.7e-143 514.2 865 48.6
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 8.4e-143 511.9 775 52.6
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 7.1e-142 508.8 819 48.7
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.7e-141 506.9 769 51.2
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 6.6e-140 502.3 704 55.7
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.7e-133 480.3 613 48.9
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-132 478.0 776 48.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 6.6e-132 475.7 823 46.9
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 2.1e-130 470.7 781 50.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.4e-129 468.0 834 48.0
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 2.2e-127 460.7 769 48.5
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.2e-127 460.7 583 50.8
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.3e-124 451.4 655 45.6
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.5e-120 438.0 615 43.4
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.0e-120 437.6 683 41.9
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 5.8e-120 436.0 809 47.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 7.6e-120 435.6 685 42.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.0e-116 423.7 559 59.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.8e-114 417.2 560 48.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.4e-113 414.1 460 52.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 7.6e-112 409.1 438 54.1
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.5e-78 298.5 328 74.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 5.7e-75 286.6 758 33.1
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 7.5e-75 286.2 310 75.2
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 8.5e-71 272.7 547 36.2
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.1e-70 272.3 305 75.4
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-70 271.2 346 67.1
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.4e-68 265.4 872 38.5
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.8e-66 257.7 404 42.8
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.4e-60 238.8 714 31.1
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 4.1e-57 227.3 398 38.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.6e-53 215.3 351 41.0
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-51 206.8 151 66.9
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.0e-39 167.2 232 42.7
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.1e-36 159.5 108 73.1
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.2e-36 157.1 98 75.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.5e-35 155.6 222 39.2
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 3.4e-35 154.5 502 28.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-30 137.5 86 73.3
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-29 133.7 83 77.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-28 131.3 83 74.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.2e-27 129.4 236 36.9
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-27 127.9 234 36.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-26 124.8 74 78.4
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-26 124.0 76 76.3
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-24 119.0 70 77.1
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-22 112.1 60 86.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.3e-22 110.9 58 87.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.6e-22 110.5 74 73.0
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-21 108.2 93 58.1
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 4.0e-20 104.4 496 24.8
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.9e-17 95.5 169 40.2
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.9e-15 87.8 148 38.5
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-14 85.9 57 68.4
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-14 85.9 82 56.1
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 4.3e-14 84.3 109 47.7
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-13 82.0 101 44.6
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.0e-11 75.5 131 40.5
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 7.6e-11 73.6 138 36.2
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.9e-10 70.9 119 38.7
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 6.4e-10 70.5 156 81.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.9e-09 68.9 184 27.7
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.7e-08 65.1 154 79.9


User provided reference genes

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