Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 0.0e+00 1352.0 699 100.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.2e-223 780.4 687 61.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 5.7e-223 778.1 688 59.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.5e-223 777.7 662 61.3
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 7.5e-223 777.7 686 60.5
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 8.3e-222 774.2 691 59.5
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 7.0e-221 771.2 670 61.5
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.2e-220 770.4 691 58.8
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.0e-219 767.3 682 59.8
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.3e-219 766.1 683 58.9
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.9e-219 765.8 674 60.8
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.1e-218 763.8 684 59.6
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.5e-218 763.5 662 61.5
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 3.3e-218 762.3 669 59.3
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.2e-218 761.9 691 59.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 9.5e-218 760.8 683 59.2
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.1e-217 759.6 689 58.6
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 6.1e-217 758.1 662 60.6
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 6.1e-217 758.1 666 59.9
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 8.0e-217 757.7 689 58.9
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 8.0e-217 757.7 688 58.1
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 8.0e-217 757.7 690 58.7
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.4e-216 756.9 667 58.6
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.8e-216 756.5 684 58.8
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.8e-216 756.5 666 60.2
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 4.0e-216 755.4 663 60.6
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 5.2e-216 755.0 684 59.1
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 6.8e-216 754.6 683 59.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.2e-215 753.8 683 58.7
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 1.5e-215 753.4 665 59.8
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.0e-215 753.1 684 59.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 2.6e-215 752.7 685 58.4
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.4e-215 752.3 681 58.7
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 4.4e-215 751.9 687 58.4
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.7e-215 751.5 668 58.5
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 5.7e-215 751.5 685 58.2
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.7e-215 751.5 688 57.3
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 5.7e-215 751.5 662 60.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 5.7e-215 751.5 691 58.3
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 7.5e-215 751.1 688 58.7
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.8e-214 749.2 672 58.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.9e-214 748.4 684 58.6
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 4.9e-214 748.4 683 59.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.4e-213 746.9 665 60.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.4e-213 746.1 662 60.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 2.7e-212 742.7 683 58.4
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.3e-211 739.6 665 59.8
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 8.6e-211 737.6 688 57.6
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.1e-210 737.3 723 56.0
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.3e-210 735.7 685 57.7
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 3.3e-210 735.7 690 56.2
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.2e-209 733.8 684 57.5
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.6e-209 733.4 684 57.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.1e-209 733.0 683 57.2
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.4e-208 730.3 685 56.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.8e-208 729.9 685 57.5
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.8e-208 729.9 662 57.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.3e-208 729.6 721 57.0
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 5.2e-208 728.4 721 56.9
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 3.4e-207 725.7 686 57.0
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 3.4e-207 725.7 680 56.9
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.4e-207 725.3 686 57.6
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.3e-206 723.8 663 56.9
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.7e-206 722.2 666 58.7
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.1e-205 720.7 686 56.3
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.1e-205 720.7 684 56.9
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 2.4e-205 719.5 686 56.1
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 5.4e-205 718.4 683 57.0
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.0e-205 718.0 673 57.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.3e-203 713.0 689 56.5
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 3.9e-203 712.2 684 56.4
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.9e-202 709.9 687 57.2
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.3e-202 709.1 666 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.2e-200 701.8 687 54.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.2e-200 701.8 687 56.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.2e-200 701.8 634 59.9
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.4e-197 693.7 669 56.4
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 5.4e-197 691.8 637 58.1
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.3e-194 682.2 714 53.6
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.5e-191 671.4 581 60.9
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.1e-189 667.5 607 58.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.3e-187 660.6 608 58.1
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.9e-187 659.1 683 54.2
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 9.5e-186 654.4 748 50.7
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.2e-183 647.5 611 57.1
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 2.9e-182 642.9 878 45.3
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.9e-181 640.2 643 54.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.4e-181 639.8 663 52.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 6.0e-180 635.2 687 52.4
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 5.6e-178 628.6 665 54.0
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.8e-174 615.9 707 50.4
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 6.7e-163 578.6 585 54.5
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.1e-154 551.2 531 56.9
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.2e-145 520.4 855 40.6
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.0e-142 509.2 629 47.2
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.4e-141 507.7 497 55.3
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.3e-139 500.4 449 59.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.5e-138 497.7 496 54.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-136 491.5 514 54.7
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.2e-119 434.9 474 51.9
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-100 371.7 358 55.6
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.6e-100 371.3 431 47.6
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.2e-84 318.5 435 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.6e-84 318.2 413 45.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.1e-69 268.9 398 42.5
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.9e-64 251.5 235 55.3
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.3e-61 239.6 174 71.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.8e-60 236.9 169 69.8
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 8.1e-60 236.1 212 62.3
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.0e-59 233.8 207 59.9
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.5e-50 205.3 288 43.8
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 9.3e-48 196.1 376 36.4
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.4e-40 172.2 251 44.2
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.9e-37 161.8 152 57.9
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 3.1e-35 154.5 144 53.5
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 6.5e-33 146.7 181 48.1
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.3e-28 132.5 176 44.3
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 6.3e-28 130.2 143 49.7
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.2e-28 129.8 78 82.1
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.1e-27 127.9 97 64.9
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 5.3e-27 127.1 103 61.2
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.2e-26 125.9 78 78.2
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 2.9e-25 121.3 97 59.8
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-24 119.4 78 70.5
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 7.9e-23 113.2 94 56.4
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 3.0e-22 111.3 217 36.4
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.1e-22 110.5 186 39.2
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 7.4e-21 106.7 157 41.4
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 9.7e-21 106.3 85 65.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.0e-17 96.3 65 75.4
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 1.1e-16 92.8 92 55.4
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.2e-15 89.4 66 65.2
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.6e-15 87.8 92 55.4
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-15 87.4 62 67.7
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 8.8e-14 83.2 97 52.6
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.0e-13 82.0 114 47.4
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 3.7e-12 77.8 50 70.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 3.7e-12 77.8 50 70.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 9.1e-11 73.2 63 52.4
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 3.5e-10 71.2 50 64.0
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.5e-10 71.2 70 52.9
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.7e-09 68.9 54 63.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.4e-06 59.3 59 57.6


User provided reference genes

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