Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_1800 Physcomitrium patens HOM05D030917 ORTHO05D009223 7.1e-119 430.6 221 100.0
Pp3c10_970 Physcomitrium patens HOM05D030917 ORTHO05D009223 5.2e-29 132.1 75 80.0
CBR_g26029 Chara braunii HOM05D030917 ORTHO05D009223 1.3e-19 100.9 244 34.4
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 4.0e-13 79.3 170 32.4
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 7.6e-12 75.1 163 30.7
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 2.7e-09 66.6 159 29.6
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 6.0e-09 65.5 156 28.2
BcaB06g25967 Brassica carinata HOM05D000561 ORTHO05D000514 3.0e-08 63.2 100 39.0
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 3.0e-08 63.2 159 28.9
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 3.9e-08 62.8 164 28.7
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 3.9e-08 62.8 175 26.3
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 5.1e-08 62.4 169 27.8
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 5.1e-08 62.4 156 28.8
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 8.6e-08 61.6 161 28.6
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 1.1e-07 61.2 159 27.7
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 1.1e-07 61.2 197 27.9
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 1.5e-07 60.8 156 27.6
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 1.5e-07 60.8 170 28.2
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 1.5e-07 60.8 156 29.5
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 1.9e-07 60.5 193 27.5
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.9e-07 60.5 166 27.1
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 1.9e-07 60.5 161 26.1
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 1.9e-07 60.5 157 29.3
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 1.9e-07 60.5 162 29.6
A03p41060 Brassica napus HOM05D000561 ORTHO05D000514 2.5e-07 60.1 96 40.6
Cre12.g533300 Chlamydomonas reinhardtii HOM05D030917 ORTHO05D009223 2.5e-07 60.1 85 37.6
Atru.chr3.3429 Acer truncatum HOM05D000428 ORTHO05D000582 3.3e-07 59.7 110 30.9
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 5.6e-07 58.9 111 28.8
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 5.6e-07 58.9 111 28.8
Carub.0003s1896 Capsella rubella HOM05D000561 ORTHO05D000514 5.6e-07 58.9 99 39.4
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 5.6e-07 58.9 154 27.9
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 7.3e-07 58.5 165 29.1
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 7.3e-07 58.5 167 27.5
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 7.3e-07 58.5 111 28.8
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 7.3e-07 58.5 111 28.8
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 7.3e-07 58.5 111 28.8
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 7.3e-07 58.5 192 27.1
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 7.3e-07 58.5 208 26.0
COL.COLO4_09651 Corchorus olitorius HOM05D000561 ORTHO05D000514 9.6e-07 58.2 84 40.5
BcaB04g19026 Brassica carinata HOM05D000561 ORTHO05D000514 1.2e-06 57.8 93 38.7
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 1.2e-06 57.8 155 28.4
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 1.2e-06 57.8 168 28.0
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 1.2e-06 57.8 128 29.7
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 1.2e-06 57.8 177 24.9
BcaC05g28539 Brassica carinata HOM05D000561 ORTHO05D000514 1.6e-06 57.4 100 37.0
C05p46110 Brassica napus HOM05D000561 ORTHO05D000514 1.6e-06 57.4 100 37.0
BolC5t33338H Brassica oleracea HOM05D000561 ORTHO05D000514 1.6e-06 57.4 100 37.0
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 1.6e-06 57.4 206 24.3
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 2.1e-06 57.0 165 27.3
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 2.1e-06 57.0 207 27.5
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 2.1e-06 57.0 159 26.4
Thhalv10011485m.g Eutrema salsugineum HOM05D000561 ORTHO05D000514 2.1e-06 57.0 127 34.6
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 2.1e-06 57.0 175 25.7
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 2.1e-06 57.0 151 27.2
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 2.8e-06 56.6 121 29.8
A05p30480 Brassica napus HOM05D000561 ORTHO05D000514 2.8e-06 56.6 100 36.0
BraA05t21888Z Brassica rapa HOM05D000561 ORTHO05D000514 2.8e-06 56.6 100 36.0
CARHR094540 Cardamine hirsuta HOM05D000561 ORTHO05D000514 2.8e-06 56.6 93 39.8
Thhalv10020763m.g Eutrema salsugineum HOM05D000561 ORTHO05D000514 2.8e-06 56.6 93 38.7
Sp5g03620 Schrenkiella parvula HOM05D002300 ORTHO05D002340 2.8e-06 56.6 111 27.9
BcaC09g48873 Brassica carinata HOM05D000561 ORTHO05D000514 3.6e-06 56.2 93 38.7
BraA03t13263Z Brassica rapa HOM05D000561 ORTHO05D000514 3.6e-06 56.2 91 38.5
Duzib213G0335 Durio zibethinus HOM05D000561 ORTHO05D000514 3.6e-06 56.2 93 37.6
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 3.6e-06 56.2 198 27.8
BcaC01g03648 Brassica carinata HOM05D000561 ORTHO05D000514 4.7e-06 55.8 93 37.6
C03p50130 Brassica napus HOM05D000561 ORTHO05D000514 4.7e-06 55.8 93 37.6
BolC3t17306H Brassica oleracea HOM05D000561 ORTHO05D000514 4.7e-06 55.8 93 37.6
Cpa.g.sc84.66 Carica papaya HOM05D000561 ORTHO05D000514 4.7e-06 55.8 74 41.9
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 4.7e-06 55.8 160 26.9
AL1G56970 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 6.2e-06 55.5 95 36.8
AL3G32500 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 6.2e-06 55.5 98 37.8
BcaB02g11095 Brassica carinata HOM05D000561 ORTHO05D000514 6.2e-06 55.5 93 37.6
BcaB04g20720 Brassica carinata HOM05D000561 ORTHO05D000514 6.2e-06 55.5 93 38.7
BraA05t20964Z Brassica rapa HOM05D000561 ORTHO05D000514 6.2e-06 55.5 93 37.6
CSS0034072 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 6.2e-06 55.5 87 35.6
TWI53G1764 Tripterygium wilfordii HOM05D000428 ORTHO05D000582 6.2e-06 55.5 96 33.3
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 8.1e-06 55.1 146 26.7
AT3G19130 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 8.1e-06 55.1 98 37.8
CAN.G766.1 Capsicum annuum HOM05D000428 ORTHO05D000582 8.1e-06 55.1 109 31.2
Cpa.g.sc5.121 Carica papaya HOM05D000428 ORTHO05D000582 8.1e-06 55.1 98 32.7
COL.COLO4_13208 Corchorus olitorius HOM05D000561 ORTHO05D000514 8.1e-06 55.1 84 41.7
TPR.G7646 Trifolium pratense HOM05D000561 ORTHO05D000514 8.1e-06 55.1 73 42.5


User provided reference genes

Program Settings