Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 9.6e-192 673.7 442 100.0
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.8e-175 618.2 415 99.5
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 9.2e-126 454.5 387 82.2
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 2.0e-112 410.2 239 77.4
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 2.2e-111 406.8 241 76.3
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.9e-111 405.6 228 79.8
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.9e-111 405.6 228 79.8
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 4.9e-111 405.6 228 79.8
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 3.2e-110 402.9 228 79.8
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 4.1e-110 402.5 228 79.4
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 5.4e-110 402.1 228 79.8
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.1e-110 401.7 240 77.5
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.2e-109 401.0 239 75.7
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.8e-109 398.3 241 76.3
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.0e-108 397.9 228 79.4
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-108 397.5 241 75.1
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.3e-108 397.5 228 79.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.3e-108 397.5 241 75.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.3e-108 396.7 228 79.4
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 3.0e-108 396.4 228 80.3
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.9e-108 396.0 247 73.3
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.1e-108 395.6 228 79.4
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 5.1e-108 395.6 228 77.6
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 6.6e-108 395.2 225 78.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 8.6e-108 394.8 225 78.2
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-107 394.4 228 78.9
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.1e-107 394.4 240 74.6
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.5e-107 394.0 228 78.1
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.5e-107 393.3 228 76.8
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 2.5e-107 393.3 228 78.9
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 3.3e-107 392.9 246 74.8
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.3e-107 392.9 228 78.5
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.3e-107 392.9 228 78.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.3e-107 392.9 240 74.2
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 3.3e-107 392.9 232 76.7
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.3e-107 392.5 261 70.9
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.5e-107 391.3 228 78.1
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-106 391.0 228 78.1
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.2e-106 391.0 228 78.5
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.8e-106 389.8 228 77.2
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 3.6e-106 389.4 228 77.2
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.6e-106 389.4 244 73.8
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.6e-106 389.4 242 73.6
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.6e-106 389.4 242 73.6
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 8.1e-106 388.3 229 78.2
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.1e-105 387.9 241 73.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.1e-105 387.9 228 78.1
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.1e-105 387.9 228 78.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.4e-105 387.5 228 76.8
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 4.0e-105 386.0 225 76.9
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.4e-104 382.9 244 73.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.4e-104 382.9 228 75.9
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 4.4e-104 382.5 235 75.7
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.3e-103 380.9 228 77.6
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.3e-103 380.9 230 75.7
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.7e-103 380.6 225 78.2
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.7e-103 380.6 223 78.9
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.7e-103 380.6 237 73.8
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.7e-103 380.6 228 77.6
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 6.4e-103 378.6 288 63.2
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.1e-102 377.9 222 78.8
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.4e-102 377.5 239 72.4
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 3.2e-102 376.3 222 78.4
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 9.2e-102 374.8 246 72.8
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 2.1e-101 373.6 222 77.5
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.7e-101 373.2 228 75.4
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.3e-100 370.9 438 50.2
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 3.9e-100 369.4 219 76.7
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.9e-100 369.4 228 74.6
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.9e-99 367.1 229 73.8
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 3.3e-99 366.3 209 80.4
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 4.3e-99 365.9 209 80.4
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 5.6e-99 365.5 229 73.8
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 7.3e-99 365.2 241 71.4
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 7.3e-99 365.2 241 71.4
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 7.3e-99 365.2 241 71.4
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 9.6e-99 364.8 230 73.5
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.7e-98 362.5 222 75.7
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 4.7e-98 362.5 227 73.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.2e-98 362.1 241 71.0
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 8.1e-98 361.7 463 54.4
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 8.1e-98 361.7 225 74.2
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.8e-97 360.5 225 73.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.4e-97 360.1 216 76.9
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 4.0e-97 359.4 228 73.2
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 6.8e-97 358.6 243 69.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 6.8e-97 358.6 228 72.8
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 2.0e-96 357.1 228 72.4
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.3e-95 354.4 228 71.9
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.3e-95 354.4 228 71.9
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.3e-95 354.4 228 71.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.7e-95 354.0 209 77.0
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-95 353.6 209 78.5
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.9e-95 353.2 293 59.4
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.9e-95 353.2 228 71.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 2.9e-95 353.2 325 56.0
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.4e-95 352.1 225 71.6
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.1e-94 351.3 233 69.1
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.4e-94 350.9 421 53.4
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.9e-94 350.5 228 73.2
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.1e-90 337.0 228 68.9
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 3.6e-90 336.3 304 56.2
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.5e-88 330.9 264 59.1
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 3.8e-87 326.2 514 48.4
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 3.6e-82 309.7 188 77.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 2.6e-80 303.5 175 80.0
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 4.2e-78 296.2 195 71.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.6e-75 285.8 154 80.5
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 4.2e-70 269.6 148 77.0
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 3.1e-65 253.4 212 59.9
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.6e-64 248.8 159 69.2
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.8e-60 237.7 204 54.4
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 6.7e-60 235.7 149 75.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 8.2e-58 228.8 204 52.9
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.1e-57 226.9 144 70.1
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.0e-55 221.9 132 77.3
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.0e-55 221.9 133 75.9
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.5e-51 208.0 174 58.6
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.2e-50 204.1 146 68.5
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.0e-48 197.6 116 79.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 1.2e-45 188.3 111 73.9
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.1e-45 187.6 195 54.4
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 7.9e-45 185.7 113 77.0
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 8.8e-44 182.2 141 63.1
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 2.0e-43 181.0 106 79.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.3e-43 180.3 131 64.1
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 3.1e-41 173.7 101 75.2
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 7.7e-40 169.1 96 76.0
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.2e-38 163.7 96 75.0
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 3.0e-36 157.1 94 79.8
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 5.7e-35 152.9 96 69.8
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.3e-34 151.8 96 71.9
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.1e-33 148.7 84 79.8
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.6e-32 144.8 112 66.1
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 4.5e-32 143.3 83 78.3
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 5.9e-32 142.9 98 69.4
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.2e-31 141.0 85 74.1
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-27 128.3 79 74.7
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-26 125.2 98 63.3
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.2e-26 124.4 79 70.9
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 6.3e-26 122.9 79 72.2
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.9e-23 114.0 77 71.4
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.5e-23 112.5 80 65.0
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 9.8e-19 99.0 54 74.1
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.8e-17 94.7 74 64.9
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.8e-17 94.7 53 73.6
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.4e-17 94.4 62 74.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.9e-16 89.7 52 80.8
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 5.9e-16 89.7 59 71.2
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 5.9e-16 89.7 79 51.9
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.6e-15 85.9 71 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.2e-13 82.0 58 72.4
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 3.4e-11 73.9 43 79.1
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.4e-09 68.6 89 40.4


User provided reference genes

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