Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.9e-161 572.4 276 100.0
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 7.0e-132 474.2 286 82.2
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.0e-127 460.3 275 81.8
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 9.8e-110 400.6 273 72.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.2e-107 393.7 238 77.7
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.7e-107 392.5 238 76.5
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 3.5e-107 392.1 232 78.9
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 6.0e-107 391.3 238 76.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.8e-107 391.0 232 76.7
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.3e-106 389.4 242 74.0
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 2.3e-106 389.4 242 74.0
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 3.9e-106 388.7 238 76.1
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 5.0e-106 388.3 233 77.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.0e-106 388.3 242 74.0
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 6.6e-106 387.9 229 77.3
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 8.6e-106 387.5 238 75.6
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-105 387.1 232 76.3
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.1e-105 387.1 233 76.4
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.9e-105 386.3 228 77.6
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.3e-105 385.6 233 75.1
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 3.3e-105 385.6 230 77.0
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 3.3e-105 385.6 229 77.3
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 3.3e-105 385.6 233 76.4
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.3e-105 385.2 238 74.8
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 4.3e-105 385.2 243 74.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 7.3e-105 384.4 229 76.9
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 7.3e-105 384.4 233 76.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 7.3e-105 384.4 238 74.4
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.2e-104 383.6 249 71.5
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.6e-104 383.3 229 76.4
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.6e-104 383.3 228 77.2
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.1e-104 382.9 239 73.6
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.1e-104 382.9 249 71.1
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.8e-104 382.5 238 73.9
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 3.6e-104 382.1 233 75.1
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 3.6e-104 382.1 230 76.1
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.7e-104 381.7 250 72.8
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.7e-104 381.7 229 75.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.2e-104 381.3 230 76.5
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.2e-104 381.3 232 75.4
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 6.2e-104 381.3 232 75.9
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 6.2e-104 381.3 248 72.2
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 6.2e-104 381.3 233 74.7
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 8.0e-104 380.9 230 75.7
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 8.0e-104 380.9 229 76.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 8.0e-104 380.9 232 75.4
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.1e-103 380.6 250 71.6
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.1e-103 380.6 237 73.8
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.1e-103 380.6 238 74.4
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.1e-103 380.6 230 75.7
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.4e-103 380.2 242 73.1
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.4e-103 380.2 230 75.2
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.4e-103 380.2 228 76.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.4e-103 380.2 238 73.9
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.4e-103 380.2 235 74.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.8e-103 379.8 232 74.6
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.3e-103 379.4 228 77.2
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 2.3e-103 379.4 232 75.4
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.3e-103 379.4 230 76.5
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 3.1e-103 379.0 232 75.9
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.1e-103 379.0 233 74.7
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 3.1e-103 379.0 248 71.4
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 4.0e-103 378.6 242 73.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.0e-103 378.6 232 75.4
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 6.8e-103 377.9 241 73.4
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 6.8e-103 377.9 233 75.1
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 6.8e-103 377.9 232 75.4
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.9e-103 377.5 234 74.4
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 8.9e-103 377.5 233 75.1
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 8.9e-103 377.5 272 68.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.2e-102 377.1 232 75.0
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-102 377.1 233 75.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.2e-102 377.1 250 70.8
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-102 376.7 232 74.6
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-102 376.7 232 74.6
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 5.8e-102 374.8 273 67.4
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 5.8e-102 374.8 233 73.8
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.8e-102 374.8 232 74.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 7.5e-102 374.4 256 69.9
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 9.8e-102 374.0 229 74.7
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.3e-101 373.6 244 72.5
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.3e-101 373.6 235 74.9
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.7e-101 373.2 232 73.3
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 2.2e-101 372.9 241 72.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 3.7e-101 372.1 272 66.9
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 3.7e-101 372.1 283 64.0
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 4.9e-101 371.7 232 74.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.4e-101 371.3 230 75.2
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 6.4e-101 371.3 250 70.4
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 8.3e-101 370.9 244 71.3
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 8.3e-101 370.9 232 74.1
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.1e-100 370.5 232 73.7
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.1e-100 370.5 227 75.3
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.4e-100 370.2 241 71.4
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-100 369.8 230 74.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.9e-100 369.8 232 73.3
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.4e-100 369.4 273 66.3
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.4e-100 369.4 273 66.3
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.4e-100 369.4 241 71.4
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 3.2e-100 369.0 272 66.9
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 3.2e-100 369.0 276 65.2
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 9.2e-100 367.5 232 73.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 9.2e-100 367.5 273 65.9
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.2e-99 367.1 232 73.3
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.6e-99 366.7 242 70.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.6e-99 366.7 242 70.7
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.6e-99 366.7 242 70.7
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.0e-99 366.3 272 66.2
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 6.0e-99 364.8 272 66.2
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 7.8e-99 364.4 232 72.8
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-98 363.6 230 73.9
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.9e-98 362.1 275 64.4
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 3.9e-98 362.1 273 65.2
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 7.3e-97 357.8 265 66.4
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 3.6e-96 355.5 229 72.1
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 8.1e-96 354.4 281 61.9
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.8e-95 351.3 217 75.6
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.2e-94 350.5 277 62.8
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 4.4e-94 348.6 233 69.1
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 4.4e-94 348.6 277 63.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.3e-93 347.1 222 73.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.5e-89 333.6 200 77.0
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.3e-89 331.3 232 68.5
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.2e-86 323.9 194 76.3
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.2e-86 323.9 245 65.3
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.5e-86 323.6 233 67.4
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.3e-85 320.5 232 67.2
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.6e-83 313.5 263 60.5
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.2e-80 303.9 311 52.4
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.7e-77 293.5 230 61.7
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.2e-77 293.1 243 57.6
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.4e-76 290.4 217 65.9
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 3.9e-74 282.3 162 80.2
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.9e-73 280.0 162 77.8
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.5e-73 279.6 160 79.4
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 7.3e-73 278.1 270 48.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-69 267.3 281 52.3
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-68 264.2 201 64.2
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.9e-68 263.5 226 59.3
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.4e-68 261.9 169 74.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 6.7e-66 255.0 162 73.5
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 5.8e-62 241.9 149 75.8
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.2e-51 207.6 135 71.9
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 7.9e-51 204.9 122 79.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.5e-49 200.7 122 77.0
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 6.9e-47 191.8 181 48.1
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.5e-46 190.7 211 47.4
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.6e-46 189.9 241 44.4
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.6e-43 180.6 121 70.2
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 4.3e-41 172.6 106 76.4
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.7e-40 169.5 100 79.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 3.2e-36 156.4 165 52.1
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-33 147.9 89 76.4
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.5e-33 147.5 83 80.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-32 143.3 89 75.3
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 3.7e-32 142.9 84 75.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.3e-32 142.1 89 74.2
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-31 139.8 83 72.3
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.1e-31 139.4 89 73.0
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 9.1e-31 138.3 77 80.5
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.9e-28 130.6 81 75.3
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 9.4e-28 128.3 81 74.1
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.1e-27 125.6 75 77.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.1e-27 125.6 75 77.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.1e-27 125.6 75 77.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.1e-27 125.6 75 77.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.4e-26 124.4 81 71.6
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-26 123.6 75 76.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.0e-25 120.6 75 74.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.6e-25 120.2 71 78.9
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.8e-24 115.9 76 73.7
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.4e-23 113.6 87 62.1
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.6e-22 110.9 84 61.9
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.6e-22 110.2 91 60.4
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 5.9e-22 109.0 84 63.1
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 6.3e-08 62.4 41 65.9
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 5.9e-06 55.8 61 47.5


User provided reference genes

Program Settings