Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_23080 Physcomitrium patens HOM05D032189 ORTHO05D000649 1.2e-124 449.9 229 100.0
Pp3c23_11581 Physcomitrium patens HOM05D000973 ORTHO05D000652 1.5e-18 97.4 188 31.4
Pp3c8_22210 Physcomitrium patens HOM05D002540 ORTHO05D002672 7.3e-18 95.1 219 29.7
Pp3c10_5660 Physcomitrium patens HOM05D000733 ORTHO05D000652 9.6e-18 94.7 178 29.8
Pp3c23_12930 Physcomitrium patens HOM05D000973 ORTHO05D003779 2.6e-15 86.7 211 25.1
Pp3c20_2570 Physcomitrium patens HOM05D002540 ORTHO05D002672 3.4e-15 86.3 215 27.9
Pp3c23_11590 Physcomitrium patens HOM05D000973 ORTHO05D000649 1.7e-14 84.0 186 26.9
Mapoly0067s0044 Marchantia polymorpha HOM05D000973 ORTHO05D000652 5.4e-13 79.0 215 27.4
AagrBONN_evm.TU.Sc2ySwM_369.295 Anthoceros agrestis HOM05D000973 ORTHO05D000644 3.5e-12 76.3 218 24.3
CDE06G0023 Ceratophyllum demersum HOM05D000733 ORTHO05D000649 7.8e-12 75.1 174 29.3
Pp3c5_2020 Physcomitrium patens HOM05D000980 ORTHO05D000649 1.3e-11 74.3 178 25.8
Oeu000603.1 Olea europaea HOM05D000980 ORTHO05D000649 1.7e-11 73.9 164 27.4
Mapoly0007s0205 Marchantia polymorpha HOM05D000973 ORTHO05D000652 5.1e-11 72.4 195 27.7
Oeu035520.1 Olea europaea HOM05D000980 ORTHO05D000649 1.9e-10 70.5 187 26.2
Os12g0159600 Oryza sativa ssp. japonica HOM05D000733 ORTHO05D000644 4.3e-10 69.3 194 28.4
Prupe.6G114100 Prunus persica HOM05D000980 ORTHO05D000649 4.3e-10 69.3 169 28.4
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 5.6e-10 68.9 189 29.1
RhsimUnG0249100 Rhododendron simsii HOM05D000980 ORTHO05D000649 9.6e-10 68.2 187 27.8
TPR.G19617 Trifolium pratense HOM05D000980 ORTHO05D000649 9.6e-10 68.2 180 29.4
Actinidia07938 Actinidia chinensis HOM05D000980 ORTHO05D000649 1.3e-09 67.8 178 29.2
Pp3c4_22140 Physcomitrium patens HOM05D000973 ORTHO05D000652 1.3e-09 67.8 182 25.8
arahy.Tifrunner.gnm1.ann1.2X3X0W Arachis hypogaea HOM05D000980 ORTHO05D000649 2.8e-09 66.6 165 25.5
arahy.Tifrunner.gnm1.ann1.ECG1V9 Arachis hypogaea HOM05D000980 ORTHO05D000649 2.8e-09 66.6 165 25.5
Pp3c12_2240 Physcomitrium patens HOM05D000733 ORTHO05D000649 2.8e-09 66.6 185 25.4
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.8e-09 66.6 197 28.9
Aqoxy1G01055 Aquilegia oxysepala HOM05D000980 ORTHO05D000649 3.6e-09 66.2 184 28.8
ClCG02G022400 Citrullus lanatus HOM05D000733 ORTHO05D000644 3.6e-09 66.2 184 28.3
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 3.6e-09 66.2 207 26.6
MD11G1149600 Malus domestica HOM05D000980 ORTHO05D000649 3.6e-09 66.2 174 26.4
SEGI_20706 Sequoiadendron giganteum HOM05D002137 ORTHO05D002144 3.6e-09 66.2 151 25.2
MELO3C014516.2 Cucumis melo HOM05D000733 ORTHO05D000644 4.8e-09 65.9 195 26.7
PSO017G0252 Papaver somniferum HOM05D000980 ORTHO05D000649 4.8e-09 65.9 179 27.9
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.8e-09 65.9 188 30.3
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 6.2e-09 65.5 213 25.8
Zm00001eb407150 Zea mays HOM05D000733 ORTHO05D000644 6.2e-09 65.5 181 27.6
Cpa.g.sc47.9 Carica papaya HOM05D000733 ORTHO05D000649 8.1e-09 65.1 179 25.1
Hma1.2p1_0051F.1_g029590 Hydrangea macrophylla HOM05D000733 ORTHO05D000649 8.1e-09 65.1 199 25.1
Lj6g0019562 Lotus japonicus HOM05D000733 ORTHO05D000649 8.1e-09 65.1 173 27.7
Psat1g209680 Pisum sativum HOM05D000733 ORTHO05D000649 8.1e-09 65.1 178 27.0
FvH4_3g30480 Fragaria vesca HOM05D000980 ORTHO05D000649 1.4e-08 64.3 169 29.6
CiPaw.13G144600 Carya illinoinensis HOM05D000733 ORTHO05D000649 1.8e-08 63.9 182 25.3
FAN11G0534 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.8e-08 63.9 169 29.0
FAN16G0197 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.8e-08 63.9 169 29.0
FAN21G3359 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.8e-08 63.9 169 29.0
MD12G1038600 Malus domestica HOM05D000980 ORTHO05D000649 1.8e-08 63.9 195 26.2
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 2.4e-08 63.5 159 25.2
PSO017G0203 Papaver somniferum HOM05D000980 ORTHO05D000649 2.4e-08 63.5 198 27.8
PSO170G2969 Papaver somniferum HOM05D000980 ORTHO05D000649 2.4e-08 63.5 198 27.8
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.4e-08 63.5 197 27.9
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 2.4e-08 63.5 187 29.9
ATR0043G050 Amborella trichopoda HOM05D000733 ORTHO05D000649 3.1e-08 63.2 182 23.6
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 3.1e-08 63.2 179 25.7
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.1e-08 63.2 201 29.4
VMungo0540G2319 Vigna mungo HOM05D000733 ORTHO05D000649 3.1e-08 63.2 184 25.5
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.0e-08 62.8 184 26.1
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 4.0e-08 62.8 211 27.5
FAN25G0910 Fragaria x ananassa HOM05D000980 ORTHO05D000649 4.0e-08 62.8 169 29.0
PSO063G3876 Papaver somniferum HOM05D000980 ORTHO05D000649 4.0e-08 62.8 199 26.6
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 4.0e-08 62.8 200 25.5
SalBow3G1483 Salvia bowleyana HOM05D000980 ORTHO05D000649 4.0e-08 62.8 197 28.4
HPP92_026747 Vanilla planifolia HOM05D000733 ORTHO05D000649 4.0e-08 62.8 189 29.1
Carub.0006s2061 Capsella rubella HOM05D000733 ORTHO05D000649 5.3e-08 62.4 191 25.7
AUR62001542 Chenopodium quinoa HOM05D000733 ORTHO05D000644 5.3e-08 62.4 189 25.9
Glyma.15G065400 Glycine max HOM05D000733 ORTHO05D000649 5.3e-08 62.4 164 27.4
PGR119G1497 Punica granatum HOM05D000980 ORTHO05D000649 5.3e-08 62.4 165 28.5
RcHm_v2.0_Chr5g0056431 Rosa chinensis HOM05D000980 ORTHO05D000649 5.3e-08 62.4 169 28.4
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 6.9e-08 62.0 179 26.8
COL.COLO4_19217 Corchorus olitorius HOM05D000980 ORTHO05D000649 6.9e-08 62.0 125 28.8
CsaV3_6G038530 Cucumis sativus L. HOM05D000733 ORTHO05D000644 6.9e-08 62.0 184 26.6
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.9e-08 62.0 183 29.5
CDE06G0234 Ceratophyllum demersum HOM05D000733 ORTHO05D000644 9.0e-08 61.6 191 25.7
SMO174G0058 Selaginella moellendorffii HOM05D000733 ORTHO05D000644 9.0e-08 61.6 113 29.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.0e-08 61.6 199 26.6
ATR0307G072 Amborella trichopoda HOM05D000973 ORTHO05D000652 1.2e-07 61.2 201 23.9
AUR62020241 Chenopodium quinoa HOM05D000733 ORTHO05D000644 1.2e-07 61.2 189 27.0
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.2e-07 61.2 185 27.0
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.2e-07 61.2 188 27.1
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.5e-07 60.8 164 26.2
MSTRG.17755 Avicennia marina HOM05D000980 ORTHO05D000649 1.5e-07 60.8 164 25.6
CAN.G546.58 Capsicum annuum HOM05D000733 ORTHO05D000649 1.5e-07 60.8 173 26.0
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 1.5e-07 60.8 181 27.1
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.5e-07 60.8 164 26.8
Glyma.13G248600 Glycine max HOM05D000733 ORTHO05D000649 1.5e-07 60.8 188 24.5
EL10Ac7g16315 Beta vulgaris HOM05D000733 ORTHO05D000644 2.0e-07 60.5 190 25.3
CAN.G1245.12 Capsicum annuum HOM05D000980 ORTHO05D000649 2.0e-07 60.5 191 26.2
Medtr2g011350 Medicago truncatula HOM05D000980 ORTHO05D000649 2.0e-07 60.5 165 26.1
SMO172G0012 Selaginella moellendorffii HOM05D000973 ORTHO05D000649 2.0e-07 60.5 133 30.8
TAR369G0482 Trochodendron aralioides HOM05D000980 ORTHO05D000649 2.0e-07 60.5 168 28.6
BcaB05g22745 Brassica carinata HOM05D000733 ORTHO05D000644 2.6e-07 60.1 197 26.4
Cfa021147 Carpinus fangiana HOM05D000980 ORTHO05D000649 2.6e-07 60.1 173 24.3
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 2.6e-07 60.1 174 24.7
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 3.4e-07 59.7 164 26.2
Duzib170G0419 Durio zibethinus HOM05D000980 ORTHO05D000649 3.4e-07 59.7 179 26.8
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 3.4e-07 59.7 201 25.9
Sed0025974 Sechium edule HOM05D000733 ORTHO05D000644 3.4e-07 59.7 183 25.7
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.4e-07 59.7 190 25.3
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.4e-07 59.7 190 25.3
Zm00001eb198910 Zea mays HOM05D000733 ORTHO05D000644 3.4e-07 59.7 175 26.3
CANSAT64G2923 Cannabis sativa HOM05D000733 ORTHO05D000649 4.4e-07 59.3 166 27.1
CARHR190690 Cardamine hirsuta HOM05D000733 ORTHO05D000649 4.4e-07 59.3 199 25.1
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.4e-07 59.3 174 24.1
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 4.4e-07 59.3 217 26.3
FAN28G2399 Fragaria x ananassa HOM05D000733 ORTHO05D000644 4.4e-07 59.3 165 21.8
FAN28G2579 Fragaria x ananassa HOM05D000733 ORTHO05D000644 4.4e-07 59.3 165 21.8
Manes.04G012200 Manihot esculenta HOM05D000733 ORTHO05D000649 4.4e-07 59.3 173 23.7
Mapoly0013s0032 Marchantia polymorpha HOM05D032189 ORTHO05D251533 4.4e-07 59.3 127 26.8
Oeu010905.1 Olea europaea HOM05D000733 ORTHO05D000644 4.4e-07 59.3 194 25.8
Eucgr.D00819 Eucalyptus grandis HOM05D004864 ORTHO05D005393 5.8e-07 58.9 195 27.2
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 7.6e-07 58.5 199 26.6
Ciclev10012678m.g Citrus clementina HOM05D000980 ORTHO05D000649 7.6e-07 58.5 199 24.6
Ciclev10029271m.g Citrus clementina HOM05D000733 ORTHO05D000644 7.6e-07 58.5 194 24.7
Gorai.006G104100 Gossypium raimondii HOM05D000980 ORTHO05D000649 7.6e-07 58.5 186 26.9
Oeu023689.1 Olea europaea HOM05D000733 ORTHO05D000644 7.6e-07 58.5 170 26.5
PGR102G2531 Punica granatum HOM05D002137 ORTHO05D002144 7.6e-07 58.5 199 23.1
CiPaw.14G106700 Carya illinoinensis HOM05D000733 ORTHO05D000649 9.9e-07 58.2 184 23.9
Os11g0157200 Oryza sativa ssp. japonica HOM05D000733 ORTHO05D000644 9.9e-07 58.2 189 27.5
QL01p014798 Quercus lobata HOM05D000980 ORTHO05D000649 9.9e-07 58.2 216 25.9
Rhsim07G0207200 Rhododendron simsii HOM05D000980 ORTHO05D000649 9.9e-07 58.2 190 27.4
THA.LOC104804070 Tarenaya hassleriana HOM05D000980 ORTHO05D000649 1.3e-06 57.8 185 27.6
DCAR_015500 Daucus carota HOM05D000980 ORTHO05D000649 1.7e-06 57.4 175 25.7
Oeu002712.1 Olea europaea HOM05D004864 ORTHO05D005393 1.7e-06 57.4 216 26.4
PSO339G0151 Papaver somniferum HOM05D000973 ORTHO05D000652 1.7e-06 57.4 170 23.5
Sc12g0003700 Simmondsia chinensis HOM05D000733 ORTHO05D000649 1.7e-06 57.4 185 27.0
Ah.15g090450 Amaranthus hybridus HOM05D000733 ORTHO05D000644 2.2e-06 57.0 161 25.5
Thhalv10015955m.g Eutrema salsugineum HOM05D000733 ORTHO05D000644 2.2e-06 57.0 179 25.1
Gorai.002G235900 Gossypium raimondii HOM05D000980 ORTHO05D000649 2.2e-06 57.0 197 24.9
PSO384G0774 Papaver somniferum HOM05D000973 ORTHO05D000652 2.2e-06 57.0 194 22.7
SalBow2G1908 Salvia bowleyana HOM05D002540 ORTHO05D002672 2.2e-06 57.0 225 24.0
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 2.9e-06 56.6 168 24.4
CSS0004876 Camellia sinensis var. sinensis HOM05D000980 ORTHO05D000649 2.9e-06 56.6 195 24.6
CSS0021498 Camellia sinensis var. sinensis HOM05D000980 ORTHO05D000649 2.9e-06 56.6 195 24.6
CSS0049475 Camellia sinensis var. sinensis HOM05D000980 ORTHO05D000649 2.9e-06 56.6 195 24.6
CiPaw.06G066300 Carya illinoinensis HOM05D002540 ORTHO05D002672 2.9e-06 56.6 211 25.6
Duzib168G1538 Durio zibethinus HOM05D000733 ORTHO05D000649 2.9e-06 56.6 166 26.5
Gohir.A09G087800 Gossypium hirsutum HOM05D000980 ORTHO05D000649 2.9e-06 56.6 186 26.3
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 2.9e-06 56.6 208 24.5
PGSC0003DMG400018355 Solanum tuberosum HOM05D000973 ORTHO05D000652 2.9e-06 56.6 115 30.4
THA.LOC104826392 Tarenaya hassleriana HOM05D008748 ORTHO05D000649 2.9e-06 56.6 199 24.1
Ah.08g210100 Amaranthus hybridus HOM05D000980 ORTHO05D000649 3.8e-06 56.2 172 26.7
AL6G33990 Arabidopsis lyrata HOM05D000733 ORTHO05D000649 3.8e-06 56.2 181 22.7
BcaC03g13866 Brassica carinata HOM05D000733 ORTHO05D000644 3.8e-06 56.2 181 23.8
BolC2t07143H Brassica oleracea HOM05D000733 ORTHO05D000644 3.8e-06 56.2 181 23.8
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 3.8e-06 56.2 217 25.8
Migut.N02538 Erythranthe guttata HOM05D000980 ORTHO05D000649 3.8e-06 56.2 164 24.4
Gohir.A01G202100 Gossypium hirsutum HOM05D000980 ORTHO05D000649 3.8e-06 56.2 197 24.4
PSO478G3050 Papaver somniferum HOM05D000733 ORTHO05D000644 3.8e-06 56.2 203 24.6
Prupe.7G097200 Prunus persica HOM05D000980 ORTHO05D000649 3.8e-06 56.2 198 27.8
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 3.8e-06 56.2 217 24.0
Ah.01g016000 Amaranthus hybridus HOM05D000733 ORTHO05D000649 4.9e-06 55.8 178 25.8
MSTRG.21082 Avicennia marina HOM05D000980 ORTHO05D000649 4.9e-06 55.8 175 27.4
BcaC01g06620 Brassica carinata HOM05D000973 ORTHO05D000652 4.9e-06 55.8 216 20.8
C03p11990 Brassica napus HOM05D000973 ORTHO05D000652 4.9e-06 55.8 216 20.8
C03p38620 Brassica napus HOM05D000733 ORTHO05D000644 4.9e-06 55.8 216 25.0
BolC3t16135H Brassica oleracea HOM05D000733 ORTHO05D000644 4.9e-06 55.8 216 25.0
Duzib128G1373 Durio zibethinus HOM05D000980 ORTHO05D000649 4.9e-06 55.8 201 24.4
Psat5g260200 Pisum sativum HOM05D000733 ORTHO05D000644 4.9e-06 55.8 180 25.6
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 4.9e-06 55.8 166 25.9
ATR0751G089 Amborella trichopoda HOM05D002540 ORTHO05D002672 6.4e-06 55.5 202 23.3
Duzib093G0606 Durio zibethinus HOM05D000980 ORTHO05D000649 6.4e-06 55.5 201 25.9
A09p01010 Brassica napus HOM05D000733 ORTHO05D000644 8.4e-06 55.1 181 24.9
BraA09t35772Z Brassica rapa HOM05D000733 ORTHO05D000644 8.4e-06 55.1 181 24.9
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 8.4e-06 55.1 205 24.4
Glyma.12G187600 Glycine max HOM05D000733 ORTHO05D000644 8.4e-06 55.1 187 25.1
Gohir.D09G087700 Gossypium hirsutum HOM05D000733 ORTHO05D000649 8.4e-06 55.1 189 24.3
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 8.4e-06 55.1 166 26.5
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 8.4e-06 55.1 213 23.5


User provided reference genes

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