Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_15030 Physcomitrium patens HOM05D003027 ORTHO05D003455 0.0e+00 1806.2 944 100.0
Pp3c3_16820 Physcomitrium patens HOM05D003027 ORTHO05D003455 0.0e+00 1212.6 969 69.3
Mapoly0130s0030 Marchantia polymorpha HOM05D003027 ORTHO05D003455 2.0e-85 321.6 853 35.6
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 5.8e-53 213.8 660 32.0
AagrBONN_evm.TU.Sc2ySwM_344.4987 Anthoceros agrestis HOM05D003027 ORTHO05D003455 1.7e-52 212.2 647 33.1
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 3.2e-51 208.0 833 30.9
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 2.1e-50 205.3 596 34.4
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 3.5e-50 204.5 782 30.7
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 4.6e-50 204.1 694 32.9
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 6.0e-50 203.8 713 31.8
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 7.9e-50 203.4 612 33.7
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 7.9e-50 203.4 600 34.0
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.8e-49 202.2 631 32.8
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 2.3e-49 201.8 792 31.7
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 2.3e-49 201.8 776 30.7
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.9e-48 198.7 599 32.9
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 3.3e-48 198.0 786 30.5
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 3.3e-48 198.0 596 32.4
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 4.3e-48 197.6 781 29.6
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 4.8e-47 194.1 593 33.1
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 2.4e-46 191.8 594 32.2
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 3.1e-46 191.4 804 29.5
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 3.1e-46 191.4 620 31.9
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 4.0e-46 191.0 622 31.4
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 4.0e-46 191.0 652 32.2
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 9.0e-46 189.9 607 32.1
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 9.0e-46 189.9 589 33.1
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 9.0e-46 189.9 738 29.8
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 9.0e-46 189.9 713 30.4
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.5e-45 189.1 824 29.1
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 3.4e-45 188.0 652 32.1
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 3.4e-45 188.0 708 30.1
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 4.5e-45 187.6 718 30.1
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 4.5e-45 187.6 713 31.1
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 5.8e-45 187.2 680 31.8
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 5.8e-45 187.2 733 31.2
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 7.6e-45 186.8 605 32.2
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 7.6e-45 186.8 702 31.6
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 7.6e-45 186.8 604 32.6
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 9.9e-45 186.4 808 29.1
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 9.9e-45 186.4 599 32.9
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 9.9e-45 186.4 692 30.5
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 9.9e-45 186.4 610 33.0
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 9.9e-45 186.4 595 30.8
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 1.3e-44 186.0 804 29.9
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.3e-44 186.0 592 32.3
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 1.7e-44 185.7 716 30.7
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 2.2e-44 185.3 609 31.4
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 2.2e-44 185.3 621 32.0
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 3.8e-44 184.5 778 30.2
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 3.8e-44 184.5 663 30.2
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 3.8e-44 184.5 597 31.5
SEGI_25646 Sequoiadendron giganteum HOM05D003027 ORTHO05D003455 3.8e-44 184.5 589 32.3
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 4.9e-44 184.1 616 32.3
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 4.9e-44 184.1 630 30.5
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 8.4e-44 183.3 596 30.5
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.4e-43 182.6 604 33.3
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.9e-43 182.2 679 30.8
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 1.9e-43 182.2 648 31.5
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 3.2e-43 181.4 824 29.5
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 4.2e-43 181.0 663 29.4
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 4.2e-43 181.0 596 32.0
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 5.5e-43 180.6 802 29.7
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 5.5e-43 180.6 594 31.6
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.2e-42 179.5 638 31.3
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 1.6e-42 179.1 655 30.5
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.6e-42 179.1 591 30.8
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.1e-42 178.7 798 30.2
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 2.7e-42 178.3 787 30.1
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 2.7e-42 178.3 594 31.5
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.5e-42 177.9 624 31.1
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 4.6e-42 177.6 777 28.8
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 6.0e-42 177.2 602 30.6
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 7.9e-42 176.8 595 30.8
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 7.9e-42 176.8 646 29.9
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 1.0e-41 176.4 725 29.9
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 1.0e-41 176.4 805 30.1
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.3e-41 176.0 604 30.6
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.8e-41 175.6 592 31.4
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 2.3e-41 175.3 798 29.8
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 3.0e-41 174.9 592 31.9
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 3.0e-41 174.9 599 32.6
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 3.0e-41 174.9 719 30.9
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 5.1e-41 174.1 663 30.6
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 5.1e-41 174.1 701 29.7
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 6.7e-41 173.7 717 30.7
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 6.7e-41 173.7 607 31.6
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 8.7e-41 173.3 619 31.0
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 8.7e-41 173.3 741 29.7
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 8.7e-41 173.3 644 29.8
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 1.1e-40 172.9 597 30.2
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.5e-40 172.6 779 28.8
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 1.5e-40 172.6 597 31.7
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.9e-40 172.2 604 30.5
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 1.9e-40 172.2 626 30.8
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 2.5e-40 171.8 591 31.6
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 9.6e-40 169.9 619 30.9
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.3e-39 169.5 749 28.3
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.3e-39 169.5 591 31.1
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 2.8e-39 168.3 806 28.0
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 2.8e-39 168.3 587 30.3
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 2.8e-39 168.3 595 30.9
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.7e-39 167.9 792 27.7
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 4.8e-39 167.5 781 29.3
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 6.2e-39 167.2 772 28.4
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 6.2e-39 167.2 809 28.4
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.1e-38 166.4 741 29.7
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.4e-38 166.0 607 29.8
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.4e-38 166.0 591 31.1
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 1.8e-38 165.6 821 28.1
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 2.4e-38 165.2 676 30.6
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 4.0e-38 164.5 601 30.8
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 9.0e-38 163.3 591 29.9
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 1.2e-37 162.9 598 31.1
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 1.2e-37 162.9 598 31.1
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 1.2e-37 162.9 595 30.3
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 1.2e-37 162.9 595 30.1
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 2.0e-37 162.2 810 28.4
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 5.8e-37 160.6 595 28.6
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 5.8e-37 160.6 591 31.3
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 1.3e-36 159.5 712 28.8
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 1.7e-36 159.1 753 28.6
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 4.9e-36 157.5 584 29.6
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 6.5e-36 157.1 584 29.5
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 8.4e-36 156.8 644 29.2
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.4e-35 156.0 616 29.5
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.4e-35 156.0 790 28.1
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.5e-35 155.2 598 28.6
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 4.2e-35 154.5 658 30.2
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 7.1e-35 153.7 587 29.0
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 7.1e-35 153.7 740 27.7
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 7.1e-35 153.7 609 29.2
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.2e-34 152.9 597 30.5
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 2.1e-34 152.1 588 30.3
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 2.1e-34 152.1 703 28.2
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.1e-34 152.1 595 30.1
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 2.1e-34 152.1 592 29.4
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 4.6e-34 151.0 591 28.4
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 7.9e-34 150.2 602 28.2
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 7.9e-34 150.2 673 28.2
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 1.0e-33 149.8 734 29.6
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 1.3e-33 149.4 612 30.2
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.3e-33 148.7 591 30.1
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 6.7e-33 147.1 592 28.4
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.1e-32 146.4 593 29.5
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.1e-32 146.4 599 29.2
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.5e-32 146.0 587 28.8
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 5.7e-32 144.1 804 26.7
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 7.4e-32 143.7 606 29.4
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 9.7e-32 143.3 732 28.0
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.3e-31 142.9 836 26.6
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.6e-31 142.5 594 27.4
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 2.8e-31 141.7 613 30.2
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 2.8e-31 141.7 613 30.2
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 6.3e-31 140.6 602 28.6
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 1.1e-30 139.8 738 28.6
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.4e-30 139.4 738 28.5
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 2.4e-30 138.7 601 28.3
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 7.6e-29 133.7 578 29.1
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 2.2e-28 132.1 611 27.2
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 8.5e-28 130.2 784 26.9
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 1.2e-26 126.3 657 25.7
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 2.1e-26 125.6 623 26.2
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 2.1e-26 125.6 623 26.2
TAR636G3275 Trochodendron aralioides HOM05D003027 ORTHO05D003455 3.9e-25 121.3 347 34.3
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 5.7e-24 117.5 671 26.4
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 7.4e-24 117.1 770 26.9
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 8.2e-23 113.6 593 25.1
CBR_g40793 Chara braunii HOM05D003027 ORTHO05D003455 9.1e-22 110.2 611 27.3
Sc19g0007990 Simmondsia chinensis HOM05D003027 ORTHO05D003455 2.9e-20 105.1 351 34.8
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 4.2e-19 101.3 592 26.5
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 7.2e-19 100.5 655 24.6
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 1.6e-18 99.4 655 24.4
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 3.3e-16 91.7 427 26.7
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.2e-15 89.0 488 26.2
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 3.7e-15 88.2 178 39.9
BcaB04g21175 Brassica carinata HOM05D003027 ORTHO05D003455 1.4e-14 86.3 405 30.6
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.0e-13 82.4 160 39.4
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 4.5e-13 81.3 175 38.3
Nn7g36946 Nelumbo nucifera HOM05D003027 ORTHO05D003455 5.5e-11 74.3 186 30.6
SMO200G0032 Selaginella moellendorffii HOM05D003027 ORTHO05D003455 7.2e-11 73.9 56 69.6
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.4e-09 69.7 278 25.9
Glyma.07G017800 Glycine max HOM05D003027 ORTHO05D003455 3.3e-08 65.1 147 35.4
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 4.4e-08 64.7 169 32.0
Solyc08g074860.1 Solanum lycopersicum HOM05D002256 ORTHO05D003455 2.2e-07 62.4 149 34.2
PGSC0003DMG400015702 Solanum tuberosum HOM05D002256 ORTHO05D003455 2.2e-07 62.4 127 38.6
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 1.8e-06 59.3 172 32.0


User provided reference genes

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