Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.0e-240 836.3 414 100.0
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.1e-217 758.8 415 89.6
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 5.1e-179 631.3 410 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.7e-179 630.9 414 74.6
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 8.7e-179 630.6 410 72.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.1e-178 630.2 410 72.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.5e-178 629.8 410 72.9
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.9e-178 629.4 410 72.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 9.7e-178 627.1 410 72.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.3e-177 626.7 404 73.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 8.2e-177 624.0 410 72.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.1e-176 623.6 410 72.7
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.8e-176 622.9 404 72.8
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.8e-176 622.9 404 73.3
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.8e-176 622.9 404 73.3
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 2.4e-176 622.5 410 72.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.1e-176 622.1 410 72.4
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.1e-176 622.1 404 73.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 3.1e-176 622.1 410 72.9
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-176 621.7 404 72.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 4.1e-176 621.7 410 72.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 6.9e-176 620.9 404 72.8
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 9.0e-176 620.5 404 73.8
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.2e-175 620.2 410 71.5
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.2e-175 620.2 410 72.2
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.0e-175 619.4 410 72.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.0e-175 619.4 407 73.0
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.0e-175 619.4 410 72.7
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.0e-175 619.4 404 73.5
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.6e-175 619.0 404 73.5
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.6e-175 619.0 410 71.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.6e-175 619.0 403 73.2
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.4e-175 618.6 404 72.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 5.9e-175 617.8 410 71.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 7.7e-175 617.5 404 72.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 7.7e-175 617.5 404 72.8
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.0e-174 617.1 410 72.4
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.3e-174 616.7 404 72.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.7e-174 616.3 410 71.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.7e-174 616.3 404 73.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.7e-174 616.3 403 72.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-174 616.3 410 71.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.2e-174 615.9 404 72.8
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.2e-174 615.9 410 71.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.2e-174 615.9 404 73.0
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.2e-174 615.9 410 71.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.9e-174 615.5 404 73.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.9e-174 615.5 404 72.5
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 5.0e-174 614.8 410 71.0
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 5.0e-174 614.8 405 72.3
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 5.0e-174 614.8 410 71.7
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.0e-174 614.8 410 71.2
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 6.5e-174 614.4 411 71.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 6.5e-174 614.4 404 72.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.5e-174 614.4 410 72.2
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.5e-174 614.4 410 72.2
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 8.5e-174 614.0 404 71.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 8.5e-174 614.0 404 72.8
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.1e-173 613.6 404 71.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.4e-173 613.2 404 72.8
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.4e-173 613.2 410 70.5
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.4e-173 613.2 404 71.0
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.4e-173 613.2 404 73.0
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.9e-173 612.8 410 71.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.9e-173 612.8 410 71.7
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.9e-173 612.8 404 71.0
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.5e-173 612.5 404 72.5
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.5e-173 612.5 404 72.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.5e-173 612.5 410 71.0
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.5e-173 612.5 404 71.8
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.5e-173 612.5 410 71.5
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 3.2e-173 612.1 404 72.5
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.5e-173 611.3 410 71.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 7.2e-173 610.9 404 72.3
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 7.2e-173 610.9 410 72.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 7.2e-173 610.9 403 72.5
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 7.2e-173 610.9 410 71.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 7.2e-173 610.9 404 72.5
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 9.4e-173 610.5 404 72.5
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 9.4e-173 610.5 404 72.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.2e-172 610.1 410 71.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.2e-172 610.1 410 71.0
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.1e-172 609.4 410 71.0
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-172 609.4 410 71.0
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.1e-172 609.4 410 70.7
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.1e-172 609.4 404 72.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.7e-172 609.0 404 71.3
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.7e-172 609.0 416 70.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.7e-172 609.0 412 70.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.6e-172 608.6 410 71.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.6e-172 608.6 404 71.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.6e-172 608.2 404 73.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 4.6e-172 608.2 404 72.0
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.6e-172 608.2 404 71.0
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-171 606.7 404 71.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.4e-171 606.7 404 71.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.4e-171 606.7 404 71.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.4e-171 606.7 404 71.5
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.4e-171 606.7 403 71.5
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-171 605.9 404 70.8
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.3e-171 605.9 405 70.4
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.9e-171 605.1 404 71.5
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.9e-171 605.1 419 71.1
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.1e-170 603.6 410 71.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.3e-170 602.1 404 70.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 5.7e-170 601.3 404 71.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 7.4e-170 600.9 409 69.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 9.7e-170 600.5 410 69.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.2e-169 599.4 452 65.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 4.1e-168 595.1 395 72.7
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 5.3e-168 594.7 400 71.2
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-167 593.6 410 68.8
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.5e-167 593.2 415 68.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.5e-167 593.2 402 70.9
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.6e-167 592.4 430 67.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 4.5e-167 591.7 404 69.1
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.3e-166 590.1 398 70.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.7e-166 589.7 447 65.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.0e-166 588.2 447 65.5
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.2e-165 585.1 470 63.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.0e-163 578.9 356 75.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 5.1e-163 578.2 356 76.1
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 8.8e-163 577.4 383 71.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.3e-161 571.2 386 71.0
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 6.3e-161 571.2 515 57.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.1e-160 570.5 356 74.4
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.2e-159 567.0 409 66.0
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-159 566.6 404 68.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.1e-157 560.5 382 69.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.7e-148 529.3 330 75.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 4.2e-141 505.4 402 63.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.6e-134 481.1 317 71.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.9e-126 455.7 315 68.6
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 9.8e-122 441.0 404 56.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.2e-121 439.9 393 57.5
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.7e-121 439.1 398 55.5
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 8.3e-121 438.0 368 60.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.9e-117 426.8 309 67.6
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.1e-112 411.0 244 80.3
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 7.6e-98 361.7 255 67.8
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.0e-91 339.3 235 70.6
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.3e-89 334.3 231 70.1
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 9.0e-83 311.6 195 72.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.0e-82 310.5 236 66.1
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.2e-81 307.0 402 43.5
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 3.4e-74 283.1 399 43.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.8e-70 270.8 180 74.4
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.0e-57 228.4 180 60.6
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 8.2e-52 208.8 141 69.5
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.4e-51 208.0 140 70.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.0e-46 191.8 124 70.2
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.5e-40 171.4 104 76.9
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.3e-17 94.4 58 67.2
COL.COLO4_11781 Corchorus olitorius HOM05D006894 ORTHO05D008724 9.5e-16 89.0 304 26.6
Thecc.02G114400 Theobroma cacao HOM05D006894 ORTHO05D008724 1.6e-15 88.2 303 27.1
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 2.1e-15 87.8 64 64.1
CsaV3_6G037480 Cucumis sativus L. HOM05D006894 ORTHO05D008724 1.8e-14 84.7 308 24.0
Medtr8g088790 Medicago truncatula HOM05D006894 ORTHO05D008724 4.0e-14 83.6 303 26.4
Duzib248G0689 Durio zibethinus HOM05D006894 ORTHO05D008724 6.8e-14 82.8 303 26.7
Gohir.A03G193500 Gossypium hirsutum HOM05D006894 ORTHO05D008724 6.8e-14 82.8 331 26.6
MD08G1235500 Malus domestica HOM05D006894 ORTHO05D008724 6.8e-14 82.8 343 24.8
GSVIVG01022874001 Vitis vinifera HOM05D006894 ORTHO05D008724 6.8e-14 82.8 364 25.8
QL02p099211 Quercus lobata HOM05D006894 ORTHO05D008724 8.9e-14 82.4 303 26.7
Cfa005507 Carpinus fangiana HOM05D006894 ORTHO05D008724 2.0e-13 81.3 303 26.4
Prupe.1G571400 Prunus persica HOM05D006894 ORTHO05D008724 2.0e-13 81.3 335 24.5
Cc02_g22630 Coffea canephora HOM05D006894 ORTHO05D008724 2.6e-13 80.9 303 25.7
Manes.07G017700 Manihot esculenta HOM05D006894 ORTHO05D008724 2.6e-13 80.9 343 23.9
RcHm_v2.0_Chr7g0221781 Rosa chinensis HOM05D006894 ORTHO05D008724 2.6e-13 80.9 341 25.2
FAN08G3638 Fragaria x ananassa HOM05D006894 ORTHO05D008724 4.4e-13 80.1 342 24.9
Lalb_Chr12g0204471 Lupinus albus HOM05D006894 ORTHO05D008724 7.5e-13 79.3 340 24.4
Glyma.05G168900 Glycine max HOM05D006894 ORTHO05D008724 2.2e-12 77.8 327 24.8
Ciclev10001270m.g Citrus clementina HOM05D006894 ORTHO05D008724 2.9e-12 77.4 300 25.0
Lj4g0002387 Lotus japonicus HOM05D006894 ORTHO05D008724 3.7e-12 77.0 303 26.1
VMungo0251G0921 Vigna mungo HOM05D006894 ORTHO05D008724 6.4e-12 76.3 303 26.4
CiPaw.05G048800 Carya illinoinensis HOM05D006894 ORTHO05D008724 8.3e-12 75.9 341 23.8
ATR0665G083 Amborella trichopoda HOM05D006894 ORTHO05D008724 1.8e-11 74.7 292 25.7
CANSAT11G1074 Cannabis sativa HOM05D006894 ORTHO05D008724 9.2e-11 72.4 335 23.0
FvH4_5g29120 Fragaria vesca HOM05D006894 ORTHO05D008724 6.6e-09 66.2 342 23.1
FAN04G0479 Fragaria x ananassa HOM05D006894 ORTHO05D008724 9.5e-08 62.4 341 22.3
Dinv19376 Davidia involucrata HOM05D006894 ORTHO05D008724 4.0e-06 57.0 225 24.0


User provided reference genes

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