Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.0e-212 741.1 359 100.0
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 7.2e-105 384.8 366 53.3
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 4.7e-104 382.1 302 59.3
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.4e-103 380.6 366 53.0
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 1.2e-102 377.5 368 51.9
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 2.6e-102 376.3 312 59.0
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.4e-102 375.9 297 59.9
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 7.5e-102 374.8 313 58.5
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 9.8e-102 374.4 297 59.9
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.7e-101 372.5 313 57.8
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 3.7e-101 372.5 296 60.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 8.3e-101 371.3 298 59.7
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.4e-100 370.5 305 58.7
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 1.8e-100 370.2 300 59.0
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 3.1e-100 369.4 298 59.1
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 5.4e-100 368.6 296 59.1
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 5.4e-100 368.6 297 57.9
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.2e-99 367.5 298 59.1
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-99 367.5 299 57.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.6e-99 367.1 298 58.7
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.6e-99 367.1 351 53.0
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 3.5e-99 365.9 300 58.0
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 3.5e-99 365.9 306 57.8
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 3.5e-99 365.9 298 59.1
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.7e-98 363.6 298 59.4
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.7e-98 363.6 298 59.4
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 2.3e-98 363.2 311 56.9
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 2.3e-98 363.2 306 57.2
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.3e-98 363.2 294 58.5
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.9e-98 362.8 335 53.4
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.9e-98 362.8 297 58.6
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 2.9e-98 362.8 297 57.6
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.9e-98 362.8 353 52.4
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 8.6e-98 361.3 311 56.3
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 8.6e-98 361.3 300 58.7
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 8.6e-98 361.3 317 56.5
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 1.9e-97 360.1 300 57.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 7.3e-97 358.2 311 55.9
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.6e-96 357.1 299 57.5
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.6e-96 357.1 303 55.8
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.1e-96 356.7 297 57.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 2.1e-96 356.7 362 52.5
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.8e-96 356.3 310 57.1
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 4.7e-96 355.5 298 57.7
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 6.1e-96 355.1 328 54.3
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.8e-95 353.6 299 57.5
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 4.0e-95 352.4 299 57.2
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 4.0e-95 352.4 348 51.1
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 8.9e-95 351.3 298 55.0
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 8.9e-95 351.3 299 54.5
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.2e-94 350.9 317 55.2
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.5e-94 350.5 314 53.5
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 2.0e-94 350.1 299 57.2
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.0e-94 350.1 299 55.2
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 4.4e-94 349.0 305 55.7
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 7.5e-94 348.2 368 47.8
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.7e-93 347.1 299 57.2
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.7e-93 347.1 312 54.8
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.2e-93 346.7 304 56.9
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.2e-93 346.7 299 56.9
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.9e-93 346.3 300 54.7
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.9e-93 346.3 321 53.3
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 3.7e-93 345.9 347 52.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.9e-93 345.5 318 53.8
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.4e-92 344.0 299 56.2
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.4e-92 344.0 320 53.8
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.4e-92 344.0 300 54.7
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.9e-92 343.6 283 58.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 3.2e-92 342.8 383 48.3
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 9.2e-92 341.3 315 54.3
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-91 340.9 296 54.4
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.6e-91 340.5 300 53.7
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.6e-91 340.5 301 54.5
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.6e-91 340.5 282 58.5
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.6e-91 340.5 272 59.6
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.6e-91 340.5 315 53.0
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.0e-91 340.1 340 51.8
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.5e-91 339.3 299 56.5
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.5e-91 339.3 315 54.0
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.7e-90 337.0 305 54.4
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.7e-90 337.0 315 53.7
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.7e-90 337.0 315 53.3
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.3e-90 336.7 299 53.2
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 3.0e-90 336.3 320 51.2
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 3.9e-90 335.9 296 54.7
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 5.0e-90 335.5 275 58.5
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 3.3e-89 332.8 352 48.6
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 9.5e-89 331.3 299 52.5
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 3.6e-88 329.3 284 56.3
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.4e-87 327.4 330 51.8
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.4e-87 327.4 300 52.7
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 4.0e-87 325.9 287 54.7
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.5e-86 323.9 318 52.8
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 2.0e-86 323.6 318 49.7
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 5.8e-86 322.0 358 47.2
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.4e-85 318.5 277 56.3
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 6.4e-85 318.5 276 57.2
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.1e-84 317.8 304 53.9
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 1.4e-84 317.4 293 52.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 9.2e-84 314.7 368 45.7
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 3.5e-83 312.8 291 55.3
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.0e-82 309.7 273 57.9
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.9e-81 307.0 300 49.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 2.5e-81 306.6 333 49.5
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 4.7e-80 302.4 218 67.4
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 6.2e-80 302.0 301 48.2
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.3e-79 300.1 298 51.3
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.2e-79 298.9 328 49.4
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 7.1e-76 288.5 259 54.1
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 7.3e-73 278.5 300 48.0
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.8e-64 250.0 336 42.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.4e-63 247.7 291 44.3
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 4.4e-62 242.7 274 46.0
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 5.4e-60 235.7 279 44.4
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 6.0e-59 232.3 277 44.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.3e-56 224.6 316 40.8
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 9.9e-54 214.9 195 53.3
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.6e-51 207.6 209 49.3
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.0e-45 188.3 213 46.9
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.0e-38 164.1 127 59.8
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.6e-32 144.4 199 40.7
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 2.9e-29 133.7 83 71.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 9.4e-28 128.6 88 64.8
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 5.1e-26 122.9 131 47.3
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 4.5e-22 109.8 73 67.1
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.2e-11 75.1 70 52.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 6.3e-08 62.8 42 59.5


User provided reference genes

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