Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_21500 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 3994.9 2211 100.0
Pp3c12_21290 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 2773.0 2231 71.6
Pp3c4_7100 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 1502.6 2262 46.5
Pp3c4_6990 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 1456.8 2241 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3670 Anthoceros agrestis HOM05D003156 ORTHO05D003508 2.1e-106 392.5 1166 33.4
Pp3c11_8780 Physcomitrium patens HOM05D003156 ORTHO05D003508 1.0e-92 347.1 1292 30.1
Pp3c11_8790 Physcomitrium patens HOM05D003156 ORTHO05D003508 1.0e-92 347.1 1292 30.1
Mapoly0001s0480 Marchantia polymorpha HOM05D003156 ORTHO05D003508 4.6e-85 321.6 1213 31.2
Pp3c7_16800 Physcomitrium patens HOM05D003156 ORTHO05D003508 6.5e-79 301.2 1291 29.3
SEGI_14984 Sequoiadendron giganteum HOM05D003156 ORTHO05D003508 4.4e-67 261.9 1842 25.7
AagrBONN_evm.TU.Sc2ySwM_351.7 Anthoceros agrestis HOM05D003156 ORTHO05D003508 8.5e-63 247.7 526 36.1
AagrBONN_evm.TU.Sc2ySwM_203.1 Anthoceros agrestis HOM05D003156 ORTHO05D003508 1.9e-62 246.5 526 36.1
AagrBONN_evm.TU.Sc2ySwM_185.8 Anthoceros agrestis HOM05D003156 ORTHO05D003508 9.4e-62 244.2 525 35.8
SEGI_14396 Sequoiadendron giganteum HOM05D003156 ORTHO05D003508 3.5e-48 199.1 505 31.1
AagrBONN_evm.TU.Sc2ySwM_351.4 Anthoceros agrestis HOM05D003156 ORTHO05D003508 4.2e-46 192.2 404 36.4
CBR_g49682 Chara braunii HOM05D000785 ORTHO05D000231 2.2e-42 179.9 315 39.0
Lalb_Chr03g0035991 Lupinus albus HOM05D003156 ORTHO05D003508 1.8e-41 176.8 601 29.8
Duzib106G1668 Durio zibethinus HOM05D003156 ORTHO05D003508 1.2e-40 174.1 515 32.8
COL.COLO4_23712 Corchorus olitorius HOM05D003156 ORTHO05D003508 5.9e-40 171.8 444 33.6
Ciclev10030482m.g Citrus clementina HOM05D003156 ORTHO05D003508 2.9e-39 169.5 546 28.9
Duzib114G0389 Durio zibethinus HOM05D003156 ORTHO05D003508 5.0e-39 168.7 451 32.6
Thecc.10G070400 Theobroma cacao HOM05D003156 ORTHO05D003508 5.0e-39 168.7 573 31.1
Cfa001606 Carpinus fangiana HOM05D003156 ORTHO05D003508 6.6e-39 168.3 540 30.7
Gohir.A13G024600 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.5e-38 166.4 558 30.6
Lalb_Chr01g0010131 Lupinus albus HOM05D003156 ORTHO05D003508 4.3e-38 165.6 580 28.6
MD12G1111500 Malus domestica HOM05D003156 ORTHO05D003508 7.3e-38 164.9 503 29.2
Phvul.007G093100 Phaseolus vulgaris HOM05D003156 ORTHO05D003508 9.5e-38 164.5 507 31.0
Glyma.10G212600 Glycine max HOM05D003156 ORTHO05D003508 1.6e-37 163.7 511 30.9
Lj2g0025480 Lotus japonicus HOM05D003156 ORTHO05D003508 1.6e-37 163.7 530 28.7
VMungo0720G1431 Vigna mungo HOM05D003156 ORTHO05D003508 1.6e-37 163.7 511 31.5
Gohir.D13G023500 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.1e-37 163.3 458 32.8
CsaV3_5G025770 Cucumis sativus L. HOM05D003156 ORTHO05D003508 3.6e-37 162.5 500 30.2
Atru.chr12.725 Acer truncatum HOM05D003156 ORTHO05D003508 4.7e-37 162.2 498 29.5
Ca_10580_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 4.7e-37 162.2 504 30.4
PSO339G2433 Papaver somniferum HOM05D003156 ORTHO05D003508 4.7e-37 162.2 633 28.6
TAR081G0003 Trochodendron aralioides HOM05D003156 ORTHO05D003508 4.7e-37 162.2 508 29.5
Gorai.013G026300 Gossypium raimondii HOM05D003156 ORTHO05D003508 6.1e-37 161.8 458 32.8
Sed0022604 Sechium edule HOM05D003156 ORTHO05D003508 6.1e-37 161.8 488 30.7
Lj1C919T3 Lonicera japonica HOM05D003156 ORTHO05D003508 8.0e-37 161.4 556 30.0
Nn2g13035 Nelumbo nucifera HOM05D003156 ORTHO05D003508 8.0e-37 161.4 594 28.1
MBI14_g09786_MAGBIO Magnolia biondii HOM05D003156 ORTHO05D003508 2.3e-36 159.8 456 31.6
GSVIVG01016309001 Vitis vinifera HOM05D003156 ORTHO05D003508 2.3e-36 159.8 460 31.1
Dinv31359 Davidia involucrata HOM05D003156 ORTHO05D003508 3.0e-36 159.5 457 31.1
Glyma.20G178500 Glycine max HOM05D003156 ORTHO05D003508 4.0e-36 159.1 506 29.6
Sabra08G0028800 Salix brachista HOM05D003156 ORTHO05D003508 5.2e-36 158.7 501 30.9
TPR.G1826 Trifolium pratense HOM05D003156 ORTHO05D003508 5.2e-36 158.7 499 30.7
Ah.11g043470 Amaranthus hybridus HOM05D003156 ORTHO05D003508 8.9e-36 157.9 525 28.8
Cc02_g11460 Coffea canephora HOM05D003156 ORTHO05D003508 1.2e-35 157.5 519 28.3
Lalb_Chr19g0129611 Lupinus albus HOM05D003156 ORTHO05D003508 1.5e-35 157.1 539 28.9
Medtr1g095570 Medicago truncatula HOM05D003156 ORTHO05D003508 1.5e-35 157.1 501 30.5
Potri.008G041900 Populus trichocarpa HOM05D003156 ORTHO05D003508 1.5e-35 157.1 501 29.9
TPR.G36666 Trifolium pratense HOM05D003156 ORTHO05D003508 1.5e-35 157.1 546 28.9
Gohir.A10G207200 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.0e-35 156.8 444 32.4
Gohir.D10G215300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.6e-35 156.4 510 31.4
Gorai.011G240800 Gossypium raimondii HOM05D003156 ORTHO05D003508 2.6e-35 156.4 510 31.4
TWI15G0830 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 2.6e-35 156.4 522 30.1
MELO3C002897.2 Cucumis melo HOM05D003156 ORTHO05D003508 4.4e-35 155.6 504 29.2
FvH4_7g19850 Fragaria vesca HOM05D003156 ORTHO05D003508 4.4e-35 155.6 518 29.0
RcHm_v2.0_Chr1g0363841 Rosa chinensis HOM05D003156 ORTHO05D003508 4.4e-35 155.6 508 29.9
Dinv11794 Davidia involucrata HOM05D003156 ORTHO05D003508 5.7e-35 155.2 501 30.7
QL08p056552 Quercus lobata HOM05D003156 ORTHO05D003508 5.7e-35 155.2 510 29.4
Hund19345 Selenicereus undatus HOM05D003156 ORTHO05D003508 5.7e-35 155.2 511 29.2
MD01G1110800 Malus domestica HOM05D003156 ORTHO05D003508 7.5e-35 154.8 659 27.9
Oeu033854.1 Olea europaea HOM05D003156 ORTHO05D003508 9.8e-35 154.5 475 29.5
FAN06G3106 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.3e-34 154.1 518 29.0
Nn2g10723 Nelumbo nucifera HOM05D003156 ORTHO05D003508 1.3e-34 154.1 644 27.5
Psat6g185160 Pisum sativum HOM05D003156 ORTHO05D003508 1.7e-34 153.7 499 30.5
Sed0025548 Sechium edule HOM05D003156 ORTHO05D003508 2.2e-34 153.3 528 28.6
CSS0022533 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 2.9e-34 152.9 504 29.0
ECA238G0789 Erigeron canadensis HOM05D003156 ORTHO05D003508 2.9e-34 152.9 441 29.0
EL10Ac2g03591 Beta vulgaris HOM05D003156 ORTHO05D003508 3.7e-34 152.5 510 31.6
Lalb_Chr06g0162221 Lupinus albus HOM05D003156 ORTHO05D003508 3.7e-34 152.5 449 30.3
Manes.07G103600 Manihot esculenta HOM05D003156 ORTHO05D003508 3.7e-34 152.5 523 28.9
Prupe.2G215600 Prunus persica HOM05D003156 ORTHO05D003508 3.7e-34 152.5 510 30.0
FAN01G2311 Fragaria x ananassa HOM05D003156 ORTHO05D003508 4.9e-34 152.1 516 28.3
PSO384G3096 Papaver somniferum HOM05D003156 ORTHO05D003508 4.9e-34 152.1 585 29.2
TAR633G1985 Trochodendron aralioides HOM05D003156 ORTHO05D003508 4.9e-34 152.1 511 29.2
DCAR_006452 Daucus carota HOM05D003156 ORTHO05D003508 6.4e-34 151.8 652 28.5
Potri.010G220000 Populus trichocarpa HOM05D003156 ORTHO05D003508 8.3e-34 151.4 501 28.1
Aa31LG10G7350 Aethionema arabicum HOM05D003156 ORTHO05D003508 1.1e-33 151.0 518 27.6
AUR62020759 Chenopodium quinoa HOM05D003156 ORTHO05D003508 1.4e-33 150.6 574 29.1
CiPaw.02G175200 Carya illinoinensis HOM05D003156 ORTHO05D003508 1.8e-33 150.2 449 29.8
FAN03G0982 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.8e-33 150.2 521 28.4
TAR369G0111 Trochodendron aralioides HOM05D003156 ORTHO05D003508 1.8e-33 150.2 509 29.3
AUR62027953 Chenopodium quinoa HOM05D003156 ORTHO05D003508 2.4e-33 149.8 510 30.2
ClCG05G020880 Citrullus lanatus HOM05D003156 ORTHO05D003508 3.2e-33 149.4 443 31.6
Aqoxy2G01803 Aquilegia oxysepala HOM05D003156 ORTHO05D003508 4.1e-33 149.1 564 28.9
CsaV3_5G036430 Cucumis sativus L. HOM05D003156 ORTHO05D003508 4.1e-33 149.1 448 28.3
Sabra10G0169800 Salix brachista HOM05D003156 ORTHO05D003508 4.1e-33 149.1 504 28.2
THA.LOC104819148 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 4.1e-33 149.1 510 27.6
A03p48760 Brassica napus HOM05D003156 ORTHO05D003508 5.4e-33 148.7 442 30.8
Manes.10G044400 Manihot esculenta HOM05D003156 ORTHO05D003508 5.4e-33 148.7 456 28.7
Lsat_1_v5_gn_2_113740 Lactuca sativa HOM05D003156 ORTHO05D003508 7.0e-33 148.3 512 29.1
CAN.G131.2 Capsicum annuum HOM05D003156 ORTHO05D003508 9.2e-33 147.9 451 28.8
Rhsim09G0153200 Rhododendron simsii HOM05D003156 ORTHO05D003508 9.2e-33 147.9 493 28.8
ATR0314G007 Amborella trichopoda HOM05D003156 ORTHO05D003508 1.2e-32 147.5 369 33.1
CDE02G1002 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 1.2e-32 147.5 454 31.3
FAN10G3307 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.2e-32 147.5 531 27.5
Sp5g10010 Schrenkiella parvula HOM05D003156 ORTHO05D003508 1.2e-32 147.5 513 27.9
PGR142G2490 Punica granatum HOM05D003156 ORTHO05D003508 1.6e-32 147.1 538 29.2
AagrBONN_evm.TU.Sc2ySwM_25.2 Anthoceros agrestis HOM05D003156 ORTHO05D003508 2.0e-32 146.7 236 40.7
BraA03t13976Z Brassica rapa HOM05D003156 ORTHO05D003508 2.0e-32 146.7 499 29.1
CSS0000465 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 2.0e-32 146.7 506 28.3
Lj5g0023323 Lotus japonicus HOM05D003156 ORTHO05D003508 2.7e-32 146.4 547 29.8
Sc20g0001950 Simmondsia chinensis HOM05D003156 ORTHO05D003508 2.7e-32 146.4 605 28.4
Ca_04674_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 4.6e-32 145.6 622 27.7
SalBow4G2724 Salvia bowleyana HOM05D003156 ORTHO05D003508 4.6e-32 145.6 519 27.6
arahy.Tifrunner.gnm1.ann1.0MFP8V Arachis hypogaea HOM05D003156 ORTHO05D003508 6.0e-32 145.2 598 27.1
Eucgr.G02815 Eucalyptus grandis HOM05D003156 ORTHO05D003508 6.0e-32 145.2 509 29.3
SGA_v2.0_scaffold341G49358 Striga asiatica HOM05D003156 ORTHO05D003508 7.8e-32 144.8 440 29.8
THA.LOC104806084 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 1.0e-31 144.4 499 28.7
Cpa.g.sc53.53 Carica papaya HOM05D003156 ORTHO05D003508 1.3e-31 144.1 515 29.3
SalBow3G0597 Salvia bowleyana HOM05D003156 ORTHO05D003508 1.3e-31 144.1 527 30.2
Gohir.D05G297300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.7e-31 143.7 444 31.5
vmacro04882 Vaccinium macrocarpon HOM05D003156 ORTHO05D003508 1.7e-31 143.7 527 28.3
Carub.0005s1861 Capsella rubella HOM05D003156 ORTHO05D003508 2.3e-31 143.3 505 28.7
Migut.F01767 Erythranthe guttata HOM05D003156 ORTHO05D003508 3.9e-31 142.5 575 27.7
Thhalv10010054m.g Eutrema salsugineum HOM05D003156 ORTHO05D003508 3.9e-31 142.5 505 28.9
Medtr6g033350 Medicago truncatula HOM05D003156 ORTHO05D003508 3.9e-31 142.5 377 33.4
arahy.Tifrunner.gnm1.ann1.PUBH8J Arachis hypogaea HOM05D003156 ORTHO05D003508 5.0e-31 142.1 581 27.2
C07p46850 Brassica napus HOM05D003156 ORTHO05D003508 5.0e-31 142.1 528 28.6
BolC7t45201H Brassica oleracea HOM05D003156 ORTHO05D003508 5.0e-31 142.1 528 28.6
Lalb_Chr02g0141981 Lupinus albus HOM05D003156 ORTHO05D003508 5.0e-31 142.1 608 25.8
MELO3C012441.2 Cucumis melo HOM05D003156 ORTHO05D003508 6.6e-31 141.7 450 30.7
Nitab4.5_0000233g0120 Nicotiana tabacum HOM05D003156 ORTHO05D003508 8.6e-31 141.4 445 29.0
Zm00001eb355010 Zea mays HOM05D003156 ORTHO05D003508 1.1e-30 141.0 501 28.3
Sed0017215 Sechium edule HOM05D003156 ORTHO05D003508 1.5e-30 140.6 442 30.1
C08p27500 Brassica napus HOM05D003156 ORTHO05D003508 1.9e-30 140.2 510 28.2
Sopen04g018550 Solanum pennellii HOM05D003156 ORTHO05D003508 1.9e-30 140.2 456 30.3
MSTRG.8149 Avicennia marina HOM05D003156 ORTHO05D003508 2.5e-30 139.8 517 30.8
CiPaw.01G274600 Carya illinoinensis HOM05D003156 ORTHO05D003508 2.5e-30 139.8 458 30.3
AagrBONN_evm.TU.Sc2ySwM_186.2 Anthoceros agrestis HOM05D003156 ORTHO05D003508 4.3e-30 139.0 457 30.4
AL5G32840 Arabidopsis lyrata HOM05D003156 ORTHO05D003508 4.3e-30 139.0 539 28.2
Zm00001eb265240 Zea mays HOM05D003156 ORTHO05D003508 4.3e-30 139.0 442 28.3
Aa31csc81G40 Aethionema arabicum HOM05D003156 ORTHO05D003508 5.6e-30 138.7 533 26.3
BraA09t39994Z Brassica rapa HOM05D003156 ORTHO05D003508 5.6e-30 138.7 510 27.5
A09p45310 Brassica napus HOM05D003156 ORTHO05D003508 1.2e-29 137.5 510 27.5
SGA_v2.0_scaffold51G18682 Striga asiatica HOM05D003156 ORTHO05D003508 1.2e-29 137.5 379 31.4
AT3G52250 Arabidopsis thaliana HOM05D003156 ORTHO05D003508 1.6e-29 137.1 501 28.9
BolC8t50370H Brassica oleracea HOM05D003156 ORTHO05D003508 1.6e-29 137.1 510 28.2
MSTRG.370 Avicennia marina HOM05D003156 ORTHO05D003508 2.1e-29 136.7 464 30.2
unitig_0.g194 Utricularia gibba HOM05D003156 ORTHO05D003508 2.1e-29 136.7 500 30.0
Nitab4.5_0004081g0040 Nicotiana tabacum HOM05D003156 ORTHO05D003508 2.8e-29 136.3 447 26.0
CANSAT56G0537 Cannabis sativa HOM05D003156 ORTHO05D003508 6.2e-29 135.2 557 29.3
CARHR162010 Cardamine hirsuta HOM05D003156 ORTHO05D003508 6.2e-29 135.2 550 27.3
Oeu042736.1 Olea europaea HOM05D003156 ORTHO05D003508 6.2e-29 135.2 521 27.1
Sed0017725 Sechium edule HOM05D003156 ORTHO05D003508 1.4e-28 134.0 451 26.4
Actinidia38262 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.8e-28 133.7 514 27.2
Oeu007399.2 Olea europaea HOM05D003156 ORTHO05D003508 5.2e-28 132.1 475 28.6
Oeu014390.1 Olea europaea HOM05D003156 ORTHO05D003508 8.9e-28 131.3 453 27.2
CDE09G0617 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 1.2e-27 131.0 453 29.8
Lsat_1_v5_gn_2_113780 Lactuca sativa HOM05D003156 ORTHO05D003508 2.0e-27 130.2 247 35.2
Oeu043931.1 Olea europaea HOM05D003156 ORTHO05D003508 1.7e-26 127.1 498 26.1
DCAR_019123 Daucus carota HOM05D003156 ORTHO05D003508 2.9e-26 126.3 666 24.8
Actinidia38263 Actinidia chinensis HOM05D003156 ORTHO05D003508 3.7e-26 125.9 439 27.8
Peaxi162Scf00108g00911 Petunia axillaris HOM05D003156 ORTHO05D003508 4.9e-26 125.6 499 25.3
Haze_16918 Corylus avellana HOM05D003156 ORTHO05D003508 6.4e-26 125.2 330 33.6
Actinidia03046 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.9e-25 123.6 364 30.5
CSS0028910 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 2.4e-25 123.2 504 27.4
HanXRQChr14g0457261 Helianthus annuus HOM05D003156 ORTHO05D003508 4.6e-24 119.0 203 35.0
AagrBONN_evm.TU.Sc2ySwM_186.4 Anthoceros agrestis HOM05D003156 ORTHO05D003508 1.0e-23 117.9 86 75.6
PGR044G0836 Punica granatum HOM05D003156 ORTHO05D003508 1.0e-23 117.9 454 27.8
Solyc04g049120.4 Solanum lycopersicum HOM05D003156 ORTHO05D003508 1.0e-23 117.9 204 35.3
VMungo0464G1901 Vigna mungo HOM05D003156 ORTHO05D003508 2.3e-23 116.7 229 33.2
Ah.10g032860 Amaranthus hybridus HOM05D003156 ORTHO05D003508 9.5e-22 111.3 361 29.1
Psat7g135120 Pisum sativum HOM05D003156 ORTHO05D003508 2.8e-21 109.8 118 44.9
Gohir.A05G297400 Gossypium hirsutum HOM05D003156 ORTHO05D003508 3.6e-21 109.4 442 26.5
HanXRQChr11g0323301 Helianthus annuus HOM05D003156 ORTHO05D003508 4.7e-21 109.0 240 31.7
AagrBONN_evm.TU.Sc2ySwM_351.5 Anthoceros agrestis HOM05D003156 ORTHO05D003508 3.1e-20 106.3 188 46.8
SMO361G0003 Selaginella moellendorffii HOM05D003156 ORTHO05D003508 5.2e-20 105.5 84 59.5
SMO361G0517 Selaginella moellendorffii HOM05D003156 ORTHO05D003508 5.2e-20 105.5 84 59.5
unitig_60.g25704 Utricularia gibba HOM05D003156 ORTHO05D003508 5.2e-20 105.5 340 30.0
Glyma.13G071701 Glycine max HOM05D003156 ORTHO05D003508 4.9e-18 99.0 111 42.3
MCO13G549 Micromonas commoda HOM05D003156 ORTHO05D003508 1.1e-17 97.8 289 28.0
Actinidia08031 Actinidia chinensis HOM05D003156 ORTHO05D003508 2.7e-16 93.2 160 35.6
Actinidia03045 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.3e-15 90.9 107 41.1
Actinidia08029 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.9e-14 87.0 88 46.6
Cre06.g264400 Chlamydomonas reinhardtii HOM05D003156 ORTHO05D003508 1.6e-13 84.0 232 26.7
HPP92_006757 Vanilla planifolia HOM05D003156 ORTHO05D003508 3.0e-07 63.2 236 25.4
Psat1g100160 Pisum sativum HOM05D003156 ORTHO05D003508 3.9e-07 62.8 526 24.9


User provided reference genes

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