Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_17300 Physcomitrium patens HOM05D001982 ORTHO05D003938 1.1e-40 169.5 81 100.0
Pp3c10_7710 Physcomitrium patens HOM05D001982 ORTHO05D003938 1.9e-21 105.5 70 68.6
Pp3c14_8260 Physcomitrium patens HOM05D001982 ORTHO05D003938 3.3e-21 104.8 70 68.6
Peaxi162Scf00021g01916 Petunia axillaris HOM05D001982 ORTHO05D003938 2.1e-20 102.1 70 65.7
CBR_g3058 Chara braunii HOM05D001982 ORTHO05D003938 3.6e-20 101.3 70 64.3
Cc11_g03450 Coffea canephora HOM05D001982 ORTHO05D003938 4.7e-20 100.9 70 65.7
Mapoly0111s0054 Marchantia polymorpha HOM05D001982 ORTHO05D003938 4.7e-20 100.9 70 65.7
Nitab4.5_0000069g0360 Nicotiana tabacum HOM05D001982 ORTHO05D003938 4.7e-20 100.9 70 65.7
Nitab4.5_0004301g0040 Nicotiana tabacum HOM05D001982 ORTHO05D003938 4.7e-20 100.9 70 65.7
Zm00001eb107590 Zea mays HOM05D001982 ORTHO05D003938 6.2e-20 100.5 70 65.7
Cre03.g193850 Chlamydomonas reinhardtii HOM05D001982 ORTHO05D003938 2.3e-19 98.6 70 61.4
Os07g0577700 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D003938 2.3e-19 98.6 70 64.3
CAN.G282.53 Capsicum annuum HOM05D001982 ORTHO05D003938 3.1e-19 98.2 70 62.9
Solyc01g007910.3 Solanum lycopersicum HOM05D001982 ORTHO05D003938 3.1e-19 98.2 70 62.9
Sopen01g003450 Solanum pennellii HOM05D001982 ORTHO05D003938 3.1e-19 98.2 70 62.9
PGSC0003DMG400016412 Solanum tuberosum HOM05D001982 ORTHO05D003938 3.1e-19 98.2 70 62.9
Hund08610 Selenicereus undatus HOM05D001982 ORTHO05D003938 5.2e-19 97.4 70 61.4
CAN.G39.9 Capsicum annuum HOM05D001982 ORTHO05D003938 6.8e-19 97.1 70 61.4
Peaxi162Scf00334g00321 Petunia axillaris HOM05D001982 ORTHO05D003938 6.8e-19 97.1 70 61.4
Solyc02g005350.3 Solanum lycopersicum HOM05D001982 ORTHO05D003938 6.8e-19 97.1 70 61.4
Sopen02g001820 Solanum pennellii HOM05D001982 ORTHO05D003938 6.8e-19 97.1 70 61.4
CANSAT64G2347 Cannabis sativa HOM05D001982 ORTHO05D003938 8.9e-19 96.7 70 61.4
MBI03_g13817_MAGBIO Magnolia biondii HOM05D001982 ORTHO05D003938 8.9e-19 96.7 70 61.4
Rhsim09G0070800 Rhododendron simsii HOM05D001982 ORTHO05D003938 8.9e-19 96.7 70 61.4
vmacro16027 Vaccinium macrocarpon HOM05D001982 ORTHO05D003938 8.9e-19 96.7 70 61.4
Manes.04G053480 Manihot esculenta HOM05D001982 ORTHO05D003938 1.2e-18 96.3 70 61.4
Manes.11G102600 Manihot esculenta HOM05D001982 ORTHO05D003938 1.2e-18 96.3 70 61.4
Oeu059725.1 Olea europaea HOM05D001982 ORTHO05D003938 1.2e-18 96.3 70 61.4
Actinidia38418 Actinidia chinensis HOM05D001982 ORTHO05D003938 1.5e-18 95.9 70 60.0
AUR62017711 Chenopodium quinoa HOM05D001982 ORTHO05D003938 1.5e-18 95.9 70 58.6
AUR62032970 Chenopodium quinoa HOM05D001982 ORTHO05D003938 1.5e-18 95.9 70 58.6
Nitab4.5_0000661g0020 Nicotiana tabacum HOM05D001982 ORTHO05D003938 1.5e-18 95.9 69 62.3
CARHR190290 Cardamine hirsuta HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 62.9
Cfa017838 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 58.6
Haze_18370 Corylus avellana HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 60.0
DCAR_023463 Daucus carota HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 60.0
Glyma.16G213200 Glycine max HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 58.6
Lj3A848T56 Lonicera japonica HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 58.6
Lj2g0016431 Lotus japonicus HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 60.0
unitig_747.g21790 Utricularia gibba HOM05D001982 ORTHO05D003938 2.0e-18 95.5 70 60.0
Actinidia13716 Actinidia chinensis HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 58.6
BcaC03g13215 Brassica carinata HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 61.4
CiPaw.16G072900 Carya illinoinensis HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 58.6
Ciclev10020931m.g Citrus clementina HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 58.6
Thhalv10013993m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 61.4
Potri.005G091400 Populus trichocarpa HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 60.0
RcHm_v2.0_Chr7g0177081 Rosa chinensis HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 60.0
Sc06g0006770 Simmondsia chinensis HOM05D001982 ORTHO05D003938 2.6e-18 95.1 70 60.0
ATR0618G140 Amborella trichopoda HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 58.6
AL6G34470 Arabidopsis lyrata HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 61.4
Eucgr.H00643 Eucalyptus grandis HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 60.0
HanXRQChr06g0170891 Helianthus annuus HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 58.6
HanXRQChr17g0540971 Helianthus annuus HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 58.6
Potri.015G028200 Populus trichocarpa HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 58.6
QL10p034220 Quercus lobata HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 60.0
Sabra12G0024700 Salix brachista HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 58.6
Sp6g34660 Schrenkiella parvula HOM05D001982 ORTHO05D003938 3.4e-18 94.7 70 60.0
Aa31LG11G2700 Aethionema arabicum HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
Aa31LG3G18270 Aethionema arabicum HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
arahy.Tifrunner.gnm1.ann1.X8LG8D Arachis hypogaea HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
arahy.Tifrunner.gnm1.ann1.XQH9IF Arachis hypogaea HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
arahy.Tifrunner.gnm1.ann1.YRK7KB Arachis hypogaea HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
MSTRG.298 Avicennia marina HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 60.0
EL10Ac9g22963 Beta vulgaris HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
C02p03480 Brassica napus HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
C07p44330 Brassica napus HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
BolC2t06309H Brassica oleracea HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
BolC7t44954H Brassica oleracea HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
BraA02t04948Z Brassica rapa HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
CSS0026731 Camellia sinensis var. sinensis HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
ClCG01G014830 Citrullus lanatus HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 60.0
Migut.F00794 Erythranthe guttata HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
Thhalv10004347m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
Glyma.09G164900 Glycine max HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 57.1
Lalb_Chr22g0353971 Lupinus albus HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
MBI06_g20297_MAGBIO Magnolia biondii HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
Phvul.004G139300 Phaseolus vulgaris HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
Sp2g23900 Schrenkiella parvula HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 61.4
THA.LOC104818374 Tarenaya hassleriana HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 60.0
TPR.G19874 Trifolium pratense HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
VMungo0464G0532 Vigna mungo HOM05D001982 ORTHO05D003938 4.4e-18 94.4 70 58.6
MSTRG.8248 Avicennia marina HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 58.6
C09p68640 Brassica napus HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 61.4
BolC9t59610H Brassica oleracea HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 61.4
Carub.0006s2102 Capsella rubella HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 60.0
Ca_11833_v3 Cicer arietinum L. HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 58.6
Lj1g0018388 Lotus japonicus HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 60.0
Lalb_Chr14g0370241 Lupinus albus HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 58.6
PSO063G1706 Papaver somniferum HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 58.6
PSO782G3517 Papaver somniferum HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 58.6
PRCOL_00000620 Prasinoderma coloniale HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 60.0
Sed0001556 Sechium edule HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 60.0
Hund24379 Selenicereus undatus HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 57.1
THA.LOC104819374 Tarenaya hassleriana HOM05D001982 ORTHO05D003938 5.8e-18 94.0 70 60.0
Aqoxy3G04305 Aquilegia oxysepala HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 58.6
MELO3C002167.2 Cucumis melo HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 60.0
Migut.N00791 Erythranthe guttata HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 60.0
MD06G1239800 Malus domestica HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 55.7
MD14G1245700 Malus domestica HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 55.7
Medtr6g077820 Medicago truncatula HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 58.6
MCO01G301 Micromonas commoda HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 58.6
Psat1g121920 Pisum sativum HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 60.0
SalBow6G6657 Salvia bowleyana HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 60.0
Sed0019851 Sechium edule HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 60.0
SGA_v2.0_scaffold221G42671 Striga asiatica HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 58.6
SGA_v2.0_scaffold2G01008 Striga asiatica HOM05D001982 ORTHO05D003938 7.5e-18 93.6 70 58.6
AT5G23250 Arabidopsis thaliana HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 60.0
A03p46310 Brassica napus HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 60.0
BraA03t13755Z Brassica rapa HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 60.0
CsaV3_1G007500 Cucumis sativus L. HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 60.0
DCAR_002589 Daucus carota HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 58.6
Dinv11727 Davidia involucrata HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 57.1
Dinv17623 Davidia involucrata HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 57.1
Hma1.2p1_0989F.1_g244810 Hydrangea macrophylla HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 58.6
Potri.012G036200 Populus trichocarpa HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 57.1
TAR371G1187 Trochodendron aralioides HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 58.6
TAR629G0467 Trochodendron aralioides HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 58.6
TAR629G3388 Trochodendron aralioides HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 58.6
GSVIVG01026227001 Vitis vinifera HOM05D001982 ORTHO05D003938 9.8e-18 93.2 70 57.1
AL6G18700 Arabidopsis lyrata HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
AT5G08300 Arabidopsis thaliana HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
BcaB01g05616 Brassica carinata HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
BcaB08g37266 Brassica carinata HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
A03p03740 Brassica napus HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
A10p28380 Brassica napus HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
C03p04220 Brassica napus HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
BolC3t12954H Brassica oleracea HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
BraA03t09721Z Brassica rapa HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
BraA10t44885Z Brassica rapa HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
Carub.0006s0718 Capsella rubella HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 60.0
COL.COLO4_33052 Corchorus olitorius HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 58.6
FvH4_5g18391 Fragaria vesca HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 58.6
FAN04G2680 Fragaria x ananassa HOM05D001982 ORTHO05D008035 1.3e-17 92.8 70 58.6
FAN08G1981 Fragaria x ananassa HOM05D001982 ORTHO05D008035 1.3e-17 92.8 70 58.6
FAN13G2347 Fragaria x ananassa HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 58.6
FAN18G1706 Fragaria x ananassa HOM05D001982 ORTHO05D008035 1.3e-17 92.8 70 58.6
Sabra05G0075300 Salix brachista HOM05D001982 ORTHO05D003938 1.3e-17 92.8 70 58.6
Atru.chr9.96 Acer truncatum HOM05D001982 ORTHO05D003938 1.7e-17 92.4 70 58.6
Duzib052G0243 Durio zibethinus HOM05D001982 ORTHO05D003938 1.7e-17 92.4 70 58.6
Duzib248G1602 Durio zibethinus HOM05D001982 ORTHO05D003938 1.7e-17 92.4 70 58.6
ECA246G4989 Erigeron canadensis HOM05D001982 ORTHO05D007237 1.7e-17 92.4 70 58.6
Nn1g09877 Nelumbo nucifera HOM05D001982 ORTHO05D003938 1.7e-17 92.4 70 57.1
Thecc.02G158000 Theobroma cacao HOM05D001982 ORTHO05D003938 1.7e-17 92.4 70 57.1
CARHR204830 Cardamine hirsuta HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 60.0
Gohir.A13G060800 Gossypium hirsutum HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 57.1
Gohir.D02G188500 Gossypium hirsutum HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 57.1
Gohir.D13G060900 Gossypium hirsutum HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 57.1
Gorai.005G211200 Gossypium raimondii HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 57.1
Gorai.013G069200 Gossypium raimondii HOM05D001982 ORTHO05D003938 2.2e-17 92.0 70 57.1
Ah.01g001460 Amaranthus hybridus HOM05D003155 ORTHO05D003938 2.9e-17 91.7 70 57.1
Duzib132G0765 Durio zibethinus HOM05D001982 ORTHO05D003938 2.9e-17 91.7 70 55.7
Gohir.A03G165300 Gossypium hirsutum HOM05D001982 ORTHO05D003938 2.9e-17 91.7 70 57.1
TWI15G0763 Tripterygium wilfordii HOM05D001982 ORTHO05D003938 2.9e-17 91.7 70 57.1
TWI81G0371 Tripterygium wilfordii HOM05D001982 ORTHO05D003938 2.9e-17 91.7 70 57.1
Pp3c6_7570 Physcomitrium patens HOM05D001982 ORTHO05D003938 4.9e-17 90.9 70 60.0
PGR083G2378 Punica granatum HOM05D001982 ORTHO05D003938 4.9e-17 90.9 70 57.1
Oeu030729.1 Olea europaea HOM05D001982 ORTHO05D003938 8.3e-17 90.1 70 58.6
Ciclev10032075m.g Citrus clementina HOM05D001982 ORTHO05D003938 1.1e-16 89.7 70 55.7
GSVIVG01029337001 Vitis vinifera HOM05D001982 ORTHO05D003938 1.1e-16 89.7 70 57.1
Eucgr.J00864 Eucalyptus grandis HOM05D001982 ORTHO05D003938 1.9e-16 89.0 70 55.7
HPP92_020368 Vanilla planifolia HOM05D001982 ORTHO05D003938 2.4e-16 88.6 70 54.3
Lj3g0023376 Lotus japonicus HOM05D001982 ORTHO05D003938 4.6e-15 84.3 70 54.3
Cfa024566 Carpinus fangiana HOM05D001982 ORTHO05D003938 6.0e-15 84.0 71 53.5
DCAR_026892 Daucus carota HOM05D001982 ORTHO05D003938 6.0e-15 84.0 85 48.2
Lsat_1_v5_gn_3_36280 Lactuca sativa HOM05D001982 ORTHO05D003938 6.0e-15 84.0 81 49.4
Oeu011121.2 Olea europaea HOM05D001982 ORTHO05D003938 6.0e-15 84.0 91 47.3
CDE02G0698 Ceratophyllum demersum HOM05D001982 ORTHO05D003938 1.0e-14 83.2 65 56.9
Haze_27086 Corylus avellana HOM05D001982 ORTHO05D003938 1.3e-14 82.8 73 49.3
Ca_28958_v3 Cicer arietinum L. HOM05D001982 ORTHO05D003938 1.4e-11 72.8 70 51.4
Haze_27382 Corylus avellana HOM05D001982 ORTHO05D003938 1.2e-10 69.7 73 46.6
CDE04G3537 Ceratophyllum demersum HOM05D001982 ORTHO05D003938 9.9e-10 66.6 70 44.3
Zm00001eb325420 Zea mays HOM05D001982 ORTHO05D003938 1.4e-08 62.8 48 58.3
Cpa.g.sc0.123 Carica papaya HOM05D001982 ORTHO05D003938 7.8e-07 57.0 61 42.6


User provided reference genes

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