Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 1.1e-188 663.3 375 100.0
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 1.0e-37 161.8 273 46.5
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 7.7e-33 145.6 340 43.8
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 1.6e-30 137.9 290 37.6
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 2.1e-30 137.5 289 36.7
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 2.1e-30 137.5 276 37.3
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 2.7e-30 137.1 290 34.8
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 3.0e-29 133.7 275 35.6
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 4.0e-29 133.3 298 41.6
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 5.2e-29 132.9 291 35.4
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 5.2e-29 132.9 291 37.5
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 8.8e-29 132.1 289 37.4
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.2e-28 131.7 340 32.1
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 1.5e-28 131.3 286 35.7
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 9.8e-28 128.6 286 35.7
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 9.8e-28 128.6 289 34.3
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 1.3e-27 128.3 274 36.1
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 1.3e-27 128.3 293 35.8
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 1.7e-27 127.9 282 35.8
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 3.7e-27 126.7 274 35.0
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 4.9e-27 126.3 276 34.4
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 8.3e-27 125.6 277 33.9
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 1.8e-26 124.4 290 33.8
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.4e-26 124.0 277 33.9
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 3.1e-26 123.6 274 33.2
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 4.1e-26 123.2 266 37.2
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 9.1e-26 122.1 289 32.9
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 1.2e-25 121.7 302 33.1
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 1.2e-25 121.7 276 33.7
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 1.2e-25 121.7 298 33.9
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.6e-25 121.3 287 32.8
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 2.0e-25 120.9 274 34.3
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 2.0e-25 120.9 281 33.1
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 2.0e-25 120.9 290 32.4
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 2.0e-25 120.9 290 33.8
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 2.7e-25 120.6 274 33.9
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 2.7e-25 120.6 273 33.3
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 4.5e-25 119.8 293 31.7
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 5.9e-25 119.4 291 32.3
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 1.0e-24 118.6 277 33.6
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 1.3e-24 118.2 262 36.3
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 1.7e-24 117.9 274 33.9
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.3e-24 117.5 274 35.0
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 2.9e-24 117.1 274 32.8
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 5.0e-24 116.3 296 34.1
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 5.0e-24 116.3 293 33.4
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 5.0e-24 116.3 279 34.8
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 8.6e-24 115.5 275 34.9
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 1.1e-23 115.2 287 33.1
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 1.1e-23 115.2 281 33.5
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.5e-23 114.8 271 34.3
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.5e-23 114.8 279 33.3
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.9e-23 114.4 275 32.4
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 1.9e-23 114.4 277 33.9
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.9e-23 114.4 278 33.5
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 2.5e-23 114.0 283 32.9
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.5e-23 114.0 275 33.5
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 3.3e-23 113.6 276 31.9
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 4.2e-23 113.2 291 33.0
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 5.6e-23 112.8 285 32.6
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 7.2e-23 112.5 276 33.3
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 1.2e-22 111.7 287 33.4
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.2e-22 111.7 279 33.3
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 1.2e-22 111.7 283 32.5
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.6e-22 111.3 275 33.8
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 1.6e-22 111.3 278 31.3
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.6e-22 111.3 269 33.8
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 2.1e-22 110.9 295 30.2
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 2.1e-22 110.9 276 30.8
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 2.8e-22 110.5 284 35.6
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 2.8e-22 110.5 288 32.3
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 2.8e-22 110.5 278 34.2
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 2.8e-22 110.5 282 33.3
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 2.8e-22 110.5 280 32.9
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 3.6e-22 110.2 257 35.0
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 3.6e-22 110.2 295 33.6
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 4.7e-22 109.8 281 32.7
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 6.1e-22 109.4 275 34.9
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 6.1e-22 109.4 337 32.9
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 8.0e-22 109.0 283 33.2
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 8.0e-22 109.0 286 31.8
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 3.0e-21 107.1 283 32.2
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 6.8e-21 105.9 279 32.3
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 6.8e-21 105.9 276 31.5
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 1.2e-20 105.1 208 38.9
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 1.2e-20 105.1 257 33.5
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 1.5e-20 104.8 293 29.4
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 3.4e-20 103.6 253 32.4
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 4.4e-20 103.2 275 33.1
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 5.7e-20 102.8 290 31.7
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 9.8e-20 102.1 294 32.3
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 1.3e-19 101.7 292 32.2
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 2.9e-19 100.5 217 35.5
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 2.9e-19 100.5 258 34.9
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 4.9e-19 99.8 166 38.6
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.4e-19 99.4 257 32.3
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 6.4e-19 99.4 285 31.6
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 1.4e-18 98.2 223 33.6
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 2.4e-18 97.4 344 27.9
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 3.2e-18 97.1 220 35.0
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 1.2e-17 95.1 280 31.4
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 2.0e-17 94.4 167 38.3
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 7.8e-17 92.4 269 30.5
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 1.7e-16 91.3 317 27.8
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 2.9e-16 90.5 271 29.9
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 1.9e-15 87.8 149 38.3
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.8e-14 84.0 275 28.7
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 6.2e-14 82.8 331 28.1
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 1.4e-13 81.6 148 37.2
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 2.6e-12 77.4 240 31.2
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 3.4e-12 77.0 280 30.4
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 9.8e-12 75.5 202 32.7
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 4.6e-09 66.6 169 33.7
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 2.3e-08 64.3 268 26.1
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 3.9e-08 63.5 231 32.0
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 1.9e-07 61.2 336 24.7


User provided reference genes

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