Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 0.0e+00 2170.6 1293 100.0
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 0.0e+00 1512.7 1298 71.8
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 2.7e-218 763.5 1314 43.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.2e-133 482.3 1263 35.9
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.2e-130 472.2 900 41.7
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 4.0e-105 387.5 1425 30.1
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.7e-85 321.6 861 30.9
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 3.8e-79 301.2 990 35.6
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.0e-72 278.9 867 29.1
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 3.9e-68 264.6 949 27.8
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 8.8e-68 263.5 922 28.0
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.8e-68 263.5 1313 29.0
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.6e-67 261.9 1376 28.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.3e-67 261.5 1447 27.0
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 4.4e-67 261.2 1329 27.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 6.3e-66 257.3 1003 26.5
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.6e-64 251.9 1374 26.4
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.0e-63 250.0 1493 26.3
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.2e-63 248.8 1479 26.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 6.5e-63 247.3 867 27.8
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 8.5e-63 246.9 1482 27.3
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.4e-62 246.1 1557 26.9
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 4.2e-62 244.6 1487 26.6
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 7.2e-62 243.8 885 27.3
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 1.6e-61 242.7 1501 26.8
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 7.9e-61 240.4 1560 26.9
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 7.9e-61 240.4 1484 26.5
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 1.8e-60 239.2 1384 26.2
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.3e-60 238.8 1304 26.3
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.3e-60 238.8 1318 26.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 3.0e-60 238.4 1489 26.2
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 5.2e-60 237.7 1506 26.7
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 5.2e-60 237.7 1487 25.6
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 6.7e-60 237.3 1485 26.8
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 6.7e-60 237.3 1309 28.6
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.1e-59 236.5 1447 26.2
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 3.3e-59 235.0 777 33.2
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 4.4e-59 234.6 1527 25.5
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 7.4e-59 233.8 1339 27.0
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.7e-58 232.6 1561 26.1
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 4.8e-58 231.1 1383 26.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-57 229.9 880 30.8
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.4e-57 228.8 1307 26.3
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.4e-57 228.8 706 33.7
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 2.4e-57 228.8 1116 27.7
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 3.1e-57 228.4 1325 27.0
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-56 226.5 1068 27.8
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.6e-56 226.1 1306 26.4
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.0e-56 225.7 1491 26.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 5.9e-56 224.2 1351 26.4
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.3e-55 223.0 1553 25.2
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.7e-55 222.6 1284 27.4
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.9e-55 221.9 1069 27.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 5.0e-55 221.1 981 25.6
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 8.5e-55 220.3 1534 26.3
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.5e-54 219.5 1311 26.5
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.2e-54 218.4 1466 25.7
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.2e-53 216.5 1419 24.6
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 2.1e-53 215.7 794 33.0
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 3.6e-53 214.9 851 30.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.6e-53 214.9 374 38.2
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 4.7e-53 214.5 1466 26.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 8.0e-53 213.8 1453 27.4
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.4e-52 213.0 1434 27.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.4e-52 213.0 1329 25.4
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.4e-52 213.0 849 31.1
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.8e-52 212.6 1473 25.5
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 2.3e-52 212.2 1585 25.2
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 4.0e-52 211.5 1521 25.2
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 6.7e-52 210.7 1363 26.7
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 8.8e-52 210.3 800 31.9
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 8.8e-52 210.3 1381 26.1
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 8.8e-52 210.3 1381 26.1
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.8e-52 210.3 1493 26.9
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.5e-51 209.5 1323 25.9
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.6e-51 208.8 1187 26.2
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 3.3e-51 208.4 1474 25.1
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 9.7e-51 206.8 376 35.4
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.2e-50 205.7 796 31.8
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 3.7e-50 204.9 1416 26.2
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 3.7e-50 204.9 1543 25.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 3.7e-50 204.9 1433 25.9
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 8.2e-50 203.8 1434 26.0
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.1e-49 203.4 1532 26.0
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.4e-49 203.0 1511 25.2
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 2.4e-49 202.2 949 25.6
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 7.0e-49 200.7 1491 25.2
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.6e-48 199.5 1521 25.2
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.7e-48 198.7 1388 25.9
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 7.7e-48 197.2 1457 25.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.3e-47 196.4 799 31.9
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 5.0e-47 194.5 1451 24.2
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 8.5e-47 193.7 619 31.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 8.5e-47 193.7 1545 25.0
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.5e-46 192.2 1487 26.7
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 9.4e-46 190.3 1486 26.2
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.2e-45 189.9 1443 25.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.6e-45 188.3 1557 24.7
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 3.6e-45 188.3 1413 25.6
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 4.7e-45 188.0 1364 26.0
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 8.8e-44 183.7 1513 24.6
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 8.8e-44 183.7 1428 26.3
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.3e-42 179.9 1456 24.7
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 2.4e-41 175.6 287 43.6
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.6e-40 172.9 1496 24.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.3e-39 169.1 807 29.2
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.5e-38 166.4 884 29.0
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 7.2e-38 164.1 1455 24.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 7.2e-38 164.1 1415 24.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.7e-34 152.9 361 30.5
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.9e-30 139.4 1268 25.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.6e-27 129.0 1458 25.1
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.4e-25 122.5 384 32.8
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 4.1e-25 121.7 521 26.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.3e-23 116.7 1214 24.2
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 4.0e-20 105.1 193 30.6
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 8.9e-20 104.0 555 24.0
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.9e-17 96.3 444 27.9
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 7.8e-16 90.9 511 23.7
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 3.0e-15 89.0 343 28.6
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.9e-14 86.3 117 39.3
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 4.3e-14 85.1 94 46.8
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 8.1e-13 80.9 116 41.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.8e-12 79.7 170 36.5
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.3e-12 79.3 76 52.6
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.0e-11 76.3 141 34.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 2.6e-11 75.9 172 36.0
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 3.2e-09 68.9 55 52.7
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-08 67.0 676 29.4
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.1e-08 66.2 78 48.7
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.3e-07 63.5 51 45.1
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 3.0e-07 62.4 51 43.1
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.6e-06 58.2 50 50.0


User provided reference genes

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