Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_10530 Physcomitrium patens HOM05D005343 ORTHO05D007153 4.2e-30 134.0 67 100.0
Pp3c15_23530 Physcomitrium patens HOM05D005343 ORTHO05D007153 1.2e-21 105.9 58 87.9
Mapoly0109s0018 Marchantia polymorpha HOM05D005343 ORTHO05D007153 6.7e-20 100.1 58 81.0
CBR_g833 Chara braunii HOM05D005343 ORTHO05D007153 7.4e-19 96.7 58 81.0
Medtr1g115295 Medicago truncatula HOM05D005343 ORTHO05D007153 2.1e-18 95.1 58 74.1
SGA_v2.0_scaffold165G38273 Striga asiatica HOM05D005343 ORTHO05D007153 2.1e-18 95.1 58 74.1
TPR.G14011 Trifolium pratense HOM05D005343 ORTHO05D007153 2.1e-18 95.1 58 74.1
Ca_11289_v3 Cicer arietinum L. HOM05D005343 ORTHO05D007153 2.8e-18 94.7 58 74.1
CDE04G3770 Ceratophyllum demersum HOM05D005343 ORTHO05D007153 3.6e-18 94.4 58 74.1
CANSAT56G3076 Cannabis sativa HOM05D005343 ORTHO05D007153 4.8e-18 94.0 58 74.1
CANSAT56G3579 Cannabis sativa HOM05D005343 ORTHO05D007153 4.8e-18 94.0 58 74.1
Lalb_Chr06g0164311 Lupinus albus HOM05D005343 ORTHO05D007153 6.2e-18 93.6 58 72.4
MD01G1125100 Malus domestica HOM05D005343 ORTHO05D007153 6.2e-18 93.6 58 74.1
MD07G1194800 Malus domestica HOM05D005343 ORTHO05D007153 6.2e-18 93.6 58 74.1
Phvul.007G011800 Phaseolus vulgaris HOM05D005343 ORTHO05D007153 6.2e-18 93.6 58 70.7
Thecc.10G046300 Theobroma cacao HOM05D005343 ORTHO05D007153 6.2e-18 93.6 58 74.1
Zm00001eb007130 Zea mays HOM05D005343 ORTHO05D007153 6.2e-18 93.6 60 70.0
Lj8A86G38 Lonicera japonica HOM05D005343 ORTHO05D007153 8.1e-18 93.2 58 72.4
Medtr1g018280 Medicago truncatula HOM05D005343 ORTHO05D007153 8.1e-18 93.2 58 72.4
Os03g0209600 Oryza sativa ssp. japonica HOM05D005343 ORTHO05D007153 8.1e-18 93.2 58 69.0
Glyma.10G289600 Glycine max HOM05D005343 ORTHO05D007153 1.1e-17 92.8 58 70.7
Gohir.A10G216000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 1.1e-17 92.8 58 70.7
Lj5g0009366 Lotus japonicus HOM05D005343 ORTHO05D007153 1.1e-17 92.8 58 72.4
Psat6g236000 Pisum sativum HOM05D005343 ORTHO05D007153 1.1e-17 92.8 58 72.4
Prupe.2G232400 Prunus persica HOM05D005343 ORTHO05D007153 1.4e-17 92.4 58 74.1
QL08p059100 Quercus lobata HOM05D005343 ORTHO05D007153 1.4e-17 92.4 58 72.4
Hund12544 Selenicereus undatus HOM05D005343 ORTHO05D007153 1.4e-17 92.4 58 72.4
ECA232G2382 Erigeron canadensis HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 70.7
Migut.E01300 Erythranthe guttata HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 69.0
Gohir.D10G225000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 70.7
Gorai.011G256000 Gossypium raimondii HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 70.7
Manes.10G032600 Manihot esculenta HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 70.7
SMO196G0053 Selaginella moellendorffii HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 70.7
PGSC0003DMG400023422 Solanum tuberosum HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 69.0
VMungo0720G2355 Vigna mungo HOM05D005343 ORTHO05D007153 1.8e-17 92.0 58 69.0
Aqoxy4G02977 Aquilegia oxysepala HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 70.7
Cfa001500 Carpinus fangiana HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
COL.COLO4_14979 Corchorus olitorius HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
Dinv31439 Davidia involucrata HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 70.7
FvH4_6g51210 Fragaria vesca HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
FAN02G3866 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
FAN09G3765 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
FAN14G3830 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 72.4
Glyma.20G099600 Glycine max HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 70.7
Solyc05g054600.3 Solanum lycopersicum HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 69.0
Sopen05g033080 Solanum pennellii HOM05D005343 ORTHO05D007153 2.4e-17 91.7 58 69.0
Actinidia29218 Actinidia chinensis HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
CSS0002854 Camellia sinensis var. sinensis HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
CiPaw.01G284500 Carya illinoinensis HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
Haze_17041 Corylus avellana HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
Nn7g38223 Nelumbo nucifera HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 69.0
Oeu059403.2 Olea europaea HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
Peaxi162Scf00015g01517 Petunia axillaris HOM05D005343 ORTHO05D007153 3.1e-17 91.3 65 61.5
PGR142G2259 Punica granatum HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
GSVIVG01016575001 Vitis vinifera HOM05D005343 ORTHO05D007153 3.1e-17 91.3 58 70.7
AUR62038368 Chenopodium quinoa HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
AUR62040959 Chenopodium quinoa HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
ClCG09G020030 Citrullus lanatus HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
MELO3C025447.2 Cucumis melo HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
CsaV3_5G026430 Cucumis sativus L. HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
HanXRQChr09g0247741 Helianthus annuus HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 69.0
Nitab4.5_0006342g0040 Nicotiana tabacum HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 69.0
RcHm_v2.0_Chr3g0483011 Rosa chinensis HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 72.4
Sc04g0005120 Simmondsia chinensis HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
TAR636G1387 Trochodendron aralioides HOM05D005343 ORTHO05D007153 4.0e-17 90.9 58 70.7
ATR0730G097 Amborella trichopoda HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 69.0
arahy.Tifrunner.gnm1.ann1.23BIS9 Arachis hypogaea HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 69.0
arahy.Tifrunner.gnm1.ann1.VWL0PE Arachis hypogaea HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 69.0
Dinv25995 Davidia involucrata HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 69.0
Nitab4.5_0001831g0140 Nicotiana tabacum HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 67.2
SalBow2G3494 Salvia bowleyana HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 70.7
SEGI_38333 Sequoiadendron giganteum HOM05D005343 ORTHO05D007153 5.3e-17 90.5 58 69.0
Atru.BG.276.p Acer truncatum HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 70.7
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 6.9e-17 90.1 61 67.2
EL10Ac2g03414 Beta vulgaris HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 69.0
CAN.G1013.7 Capsicum annuum HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 67.2
Cpa.g.sc1.387 Carica papaya HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 70.7
Ciclev10030995m.g Citrus clementina HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 70.7
Cc02_g08110 Coffea canephora HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 70.7
Hma1.2p1_2133F.1_g314780 Hydrangea macrophylla HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 69.0
HPP92_007845 Vanilla planifolia HOM05D005343 ORTHO05D007153 6.9e-17 90.1 58 70.7
AL5G36550 Arabidopsis lyrata HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
AT3G55400 Arabidopsis thaliana HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
Carub.0005s2211 Capsella rubella HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
CARHR165410 Cardamine hirsuta HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
Thhalv10010210m.g Eutrema salsugineum HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
FvH4_6g24170 Fragaria vesca HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
FAN14G5877 Fragaria x ananassa HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
PSO339G4546 Papaver somniferum HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 69.0
PSO384G0408 Papaver somniferum HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 69.0
Sp5g07070 Schrenkiella parvula HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 70.7
Sed0015228 Sechium edule HOM05D005343 ORTHO05D007153 9.0e-17 89.7 58 69.0
Duzib114G0552 Durio zibethinus HOM05D005343 ORTHO05D007153 1.2e-16 89.4 58 70.7
PSO541G2783 Papaver somniferum HOM05D005343 ORTHO05D007153 1.2e-16 89.4 58 67.2
Potri.010G207300 Populus trichocarpa HOM05D005343 ORTHO05D007153 1.2e-16 89.4 58 69.0
Rhsim09G0164800 Rhododendron simsii HOM05D005343 ORTHO05D007153 1.2e-16 89.4 58 69.0
Sabra10G0160100 Salix brachista HOM05D005343 ORTHO05D007153 1.2e-16 89.4 58 69.0
BcaB01g00104 Brassica carinata HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
BcaB02g08424 Brassica carinata HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
BcaC07g39858 Brassica carinata HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
A09p48330 Brassica napus HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
C08p30620 Brassica napus HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
BolC8t50678H Brassica oleracea HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
BraA09t40285Z Brassica rapa HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
TWI63G0552 Tripterygium wilfordii HOM05D005343 ORTHO05D007153 1.5e-16 89.0 58 69.0
THA.LOC104807113 Tarenaya hassleriana HOM05D005343 ORTHO05D007153 2.0e-16 88.6 58 69.0
BcaC02g09754 Brassica carinata HOM05D005343 ORTHO05D007153 2.6e-16 88.2 61 65.6
C04p36970 Brassica napus HOM05D005343 ORTHO05D007153 2.6e-16 88.2 61 65.6
BolC4t25262H Brassica oleracea HOM05D005343 ORTHO05D007153 2.6e-16 88.2 61 65.6
Eucgr.J00041 Eucalyptus grandis HOM05D005343 ORTHO05D007153 3.4e-16 87.8 58 67.2
DCAR_015189 Daucus carota HOM05D005343 ORTHO05D007153 5.8e-16 87.0 58 67.2
Aa31LG10G10420 Aethionema arabicum HOM05D005343 ORTHO05D007153 7.6e-16 86.7 58 67.2
A04p04540 Brassica napus HOM05D005343 ORTHO05D007153 7.6e-16 86.7 58 65.5
BraA04t16165Z Brassica rapa HOM05D005343 ORTHO05D007153 7.6e-16 86.7 58 65.5
unitig_62.g23894 Utricularia gibba HOM05D005343 ORTHO05D007153 2.2e-15 85.1 54 70.4
PRCOL_00006366 Prasinoderma coloniale HOM05D005343 ORTHO05D007153 7.1e-14 80.1 58 62.1
Cre12.g487100 Chlamydomonas reinhardtii HOM05D005343 ORTHO05D007153 1.6e-13 79.0 58 63.8
Lsat_1_v5_gn_9_65321 Lactuca sativa HOM05D005343 ORTHO05D007153 4.6e-13 77.4 58 65.5
FAN09G1498 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.8e-10 68.2 46 67.4
Cpa.g.sc1.385 Carica papaya HOM05D005343 ORTHO05D007153 1.4e-06 55.8 43 53.5
MCO07G098 Micromonas commoda HOM05D005343 ORTHO05D007153 4.2e-06 54.3 58 34.5


User provided reference genes

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