Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 1.0e-140 503.4 256 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 3.4e-56 222.6 182 62.6
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 3.3e-51 206.1 256 47.3
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 3.4e-48 196.1 211 51.2
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 5.8e-48 195.3 227 48.5
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 4.9e-47 192.2 186 54.3
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 4.9e-47 192.2 186 54.3
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 6.4e-47 191.8 186 53.2
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 2.4e-46 189.9 183 56.8
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 3.2e-46 189.5 187 54.5
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 4.2e-46 189.1 184 52.7
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 5.4e-46 188.7 191 53.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 9.3e-46 188.0 190 54.2
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 1.2e-45 187.6 191 53.9
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 1.2e-45 187.6 190 54.2
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.2e-45 187.6 230 49.1
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.2e-45 187.6 191 53.9
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.6e-45 187.2 189 54.0
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 1.6e-45 187.2 201 52.7
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 2.1e-45 186.8 190 53.7
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.7e-45 186.4 224 47.3
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.7e-45 186.4 214 49.1
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 3.5e-45 186.0 199 52.3
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 3.5e-45 186.0 199 52.3
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 3.5e-45 186.0 199 52.3
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.5e-45 186.0 190 50.5
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 3.5e-45 186.0 201 52.7
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 4.6e-45 185.7 210 51.0
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 4.6e-45 185.7 190 50.5
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 6.0e-45 185.3 208 50.0
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 6.0e-45 185.3 190 50.5
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 6.0e-45 185.3 201 52.2
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 7.8e-45 184.9 195 51.8
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 7.8e-45 184.9 195 51.8
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 7.8e-45 184.9 201 51.7
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.0e-44 184.5 202 51.0
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 1.0e-44 184.5 183 52.5
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 1.0e-44 184.5 186 54.8
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 1.3e-44 184.1 192 52.6
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 1.7e-44 183.7 192 52.6
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.7e-44 183.7 192 51.6
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.3e-44 183.3 190 53.7
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.3e-44 183.3 190 53.7
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 2.3e-44 183.3 188 54.3
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.3e-44 183.3 192 53.1
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 2.3e-44 183.3 195 52.3
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 2.3e-44 183.3 198 51.0
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 2.3e-44 183.3 190 53.2
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 3.0e-44 183.0 192 52.6
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 3.0e-44 183.0 192 52.1
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 3.9e-44 182.6 194 52.1
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 3.9e-44 182.6 193 53.4
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 5.1e-44 182.2 194 50.0
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 5.1e-44 182.2 184 51.6
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 5.1e-44 182.2 208 50.5
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 5.1e-44 182.2 185 53.0
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 6.6e-44 181.8 197 50.8
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 6.6e-44 181.8 191 52.4
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 6.6e-44 181.8 187 53.5
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.6e-44 181.8 183 51.9
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 6.6e-44 181.8 182 52.2
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 8.7e-44 181.4 196 52.6
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 1.1e-43 181.0 184 53.3
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 1.1e-43 181.0 194 51.5
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 1.5e-43 180.6 183 51.9
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.5e-43 180.6 190 55.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 1.5e-43 180.6 192 51.6
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.5e-43 180.6 192 51.6
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.9e-43 180.3 194 51.5
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 1.9e-43 180.3 204 50.0
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.9e-43 180.3 192 50.5
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 2.5e-43 179.9 182 50.0
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 3.3e-43 179.5 211 48.8
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.3e-43 179.5 191 53.4
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 4.3e-43 179.1 191 52.9
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 4.3e-43 179.1 206 50.0
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 4.3e-43 179.1 174 54.0
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 5.6e-43 178.7 204 48.0
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 7.3e-43 178.3 189 52.4
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 9.6e-43 177.9 192 53.6
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 9.6e-43 177.9 217 47.9
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 9.6e-43 177.9 185 51.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.3e-42 177.6 182 51.1
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.6e-42 177.2 200 49.0
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.6e-42 177.2 194 51.0
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 1.6e-42 177.2 225 46.2
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 2.1e-42 176.8 188 52.1
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 2.1e-42 176.8 196 50.0
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.8e-42 176.4 188 52.1
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 2.8e-42 176.4 204 49.0
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.6e-42 176.0 202 48.5
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 4.8e-42 175.6 178 51.1
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 1.1e-41 174.5 182 50.0
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 2.4e-41 173.3 234 45.7
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 5.3e-41 172.2 175 53.1
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 5.3e-41 172.2 174 54.0
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 5.8e-40 168.7 128 60.9
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 9.9e-40 167.9 176 51.7
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 9.9e-40 167.9 213 46.9
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 1.3e-39 167.5 193 48.2
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.7e-39 167.2 182 51.6
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.7e-39 167.2 183 49.7
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 2.9e-39 166.4 195 49.7
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 6.4e-39 165.2 182 49.5
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 1.1e-38 164.5 190 47.9
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.9e-38 163.7 242 42.6
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.1e-38 161.8 140 57.9
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 3.0e-36 156.4 249 39.8
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 2.5e-35 153.3 115 63.5
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 4.5e-32 142.5 115 61.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 4.3e-27 125.9 147 49.7
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 7.1e-22 108.6 68 73.5
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.9e-19 100.5 180 36.7
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.1e-17 94.7 94 55.3
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.1e-17 94.7 61 68.9
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 6.9e-17 92.0 94 54.3
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.3e-15 87.8 166 38.0
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 1.2e-13 81.3 56 66.1
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 7.4e-11 72.0 50 62.0


User provided reference genes

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