Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 0.0e+00 1288.5 633 100.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 5.0e-210 734.9 569 63.1
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 4.9e-197 691.8 522 63.8
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 7.8e-195 684.5 547 58.3
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 2.1e-192 676.4 544 58.8
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 2.1e-192 676.4 544 59.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 2.8e-192 676.0 544 59.2
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 3.6e-192 675.6 549 58.8
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 4.7e-192 675.2 544 59.2
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.1e-191 674.1 544 59.0
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 3.1e-191 672.5 549 58.3
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 4.0e-191 672.2 547 58.1
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 5.2e-191 671.8 549 59.2
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 5.8e-190 668.3 544 57.2
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 5.8e-190 668.3 554 57.2
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 7.6e-190 667.9 547 57.8
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 9.9e-190 667.5 544 57.5
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 9.9e-190 667.5 560 57.1
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 1.7e-189 666.8 544 58.3
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 2.2e-189 666.4 547 59.0
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 2.2e-189 666.4 544 58.3
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 2.2e-189 666.4 544 57.5
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.9e-189 666.0 544 57.7
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 2.9e-189 666.0 552 58.3
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 3.7e-189 665.6 544 58.1
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 4.9e-189 665.2 545 57.8
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 6.4e-189 664.8 544 58.3
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 1.9e-188 663.3 553 57.7
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.4e-188 662.9 544 57.7
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.2e-188 662.5 554 56.5
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 4.1e-188 662.1 548 57.8
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 9.2e-188 661.0 550 56.5
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.2e-187 660.6 549 57.7
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 7.8e-187 657.9 549 56.8
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.0e-186 657.5 572 55.6
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 1.0e-186 657.5 544 56.6
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.7e-186 656.8 549 56.5
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 3.0e-186 656.0 544 57.0
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 3.0e-186 656.0 538 58.4
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.9e-186 655.6 563 55.8
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 3.9e-186 655.6 544 58.3
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 8.6e-186 654.4 567 55.6
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.5e-185 653.7 562 56.6
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 1.5e-185 653.7 544 56.8
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.5e-185 652.9 562 56.9
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 3.3e-185 652.5 540 57.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 3.3e-185 652.5 544 57.5
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 5.6e-185 651.7 546 56.0
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.6e-185 651.0 576 55.0
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 9.6e-185 651.0 544 57.9
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.2e-184 650.6 544 56.4
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 1.6e-184 650.2 571 54.8
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 6.2e-184 648.3 570 54.6
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 6.2e-184 648.3 544 56.8
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 6.2e-184 648.3 547 56.1
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 8.1e-184 647.9 573 55.7
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 1.1e-183 647.5 544 56.1
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.4e-183 647.1 544 56.8
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 2.4e-183 646.4 570 54.4
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 2.4e-183 646.4 568 54.6
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 5.2e-183 645.2 580 54.0
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 8.9e-183 644.4 570 54.6
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.2e-182 644.0 580 54.0
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.2e-182 644.0 570 54.4
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 1.5e-182 643.7 572 54.4
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.9e-182 641.0 571 54.8
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.3e-181 640.6 571 55.2
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 6.4e-181 638.3 636 51.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.1e-180 637.5 545 55.8
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 6.0e-179 631.7 495 59.4
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 6.6e-178 628.2 544 55.7
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.4e-175 620.5 623 49.3
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 3.1e-175 619.4 548 54.2
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 6.9e-175 618.2 544 52.9
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 6.9e-175 618.2 555 54.1
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 9.0e-175 617.8 496 60.1
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.9e-172 610.1 545 55.2
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.1e-171 606.7 486 56.8
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 6.2e-168 595.1 471 59.9
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 4.0e-167 592.4 545 53.6
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.5e-166 589.0 562 53.0
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.9e-164 583.6 511 55.4
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 4.2e-164 582.4 564 52.1
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 4.8e-160 568.9 528 53.0
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.1e-159 567.8 455 59.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.3e-157 560.8 545 50.6
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 7.4e-153 545.0 504 54.0
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 6.5e-149 531.9 571 49.2
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.2e-147 527.7 572 48.1
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 1.1e-145 521.2 540 49.6
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 8.8e-138 495.0 538 47.4
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 3.8e-133 479.6 409 57.0
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 8.5e-125 451.8 544 44.3
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 2.2e-117 427.2 369 59.1
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 6.5e-117 425.6 317 61.8
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 2.3e-114 417.2 460 48.3
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 8.8e-114 415.2 307 61.2
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.5e-113 414.5 344 57.8
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 7.0e-111 405.6 317 58.7
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.6e-110 404.4 335 57.6
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.5e-110 402.9 518 43.8
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 4.2e-108 396.4 369 54.2
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.6e-99 367.9 548 38.1
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 4.9e-96 356.3 627 35.9
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 1.4e-95 354.8 302 57.9
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 3.5e-94 350.1 419 46.8
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.6e-67 261.5 250 50.4
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.4e-65 253.8 230 53.5
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 9.9e-65 252.3 202 56.9
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-45 189.1 164 53.0
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 3.7e-43 180.6 149 57.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 9.3e-39 166.0 159 53.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.1e-37 160.2 139 54.0
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.1e-31 142.5 111 58.6
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 5.0e-24 117.1 127 45.7
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 3.2e-23 114.4 101 49.5
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 7.2e-23 113.2 69 73.9
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.7e-20 103.6 161 40.4
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.6e-17 94.7 85 50.6
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 2.9e-16 91.3 96 44.8
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 6.5e-16 90.1 61 68.9
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 6.7e-13 80.1 108 43.5
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.4e-12 77.4 42 81.0
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 2.2e-08 65.1 61 45.9


User provided reference genes

Program Settings