Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 0.0e+00 1855.1 981 100.0
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 2.4e-304 1048.9 992 58.2
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.9e-288 996.1 841 64.6
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 4.4e-253 878.6 842 58.6
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 3.1e-214 749.6 971 45.9
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 2.9e-212 743.0 952 46.0
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.4e-211 740.7 940 46.5
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.9e-211 740.3 940 46.7
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 3.0e-209 733.0 943 45.7
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 1.6e-207 727.2 945 46.9
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 2.1e-207 726.9 960 46.0
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.8e-207 726.5 943 46.4
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 6.2e-207 725.3 943 45.8
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 1.4e-206 724.2 960 45.8
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 3.1e-206 723.0 972 44.8
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.2e-205 721.1 935 46.2
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.5e-205 720.7 950 45.6
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 3.4e-205 719.5 944 45.6
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 9.9e-205 718.0 943 45.3
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 1.3e-204 717.6 986 45.4
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 2.2e-204 716.8 943 45.4
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 2.2e-204 716.8 985 44.3
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.9e-204 716.5 968 45.1
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 3.7e-204 716.1 938 45.0
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 8.4e-204 714.9 970 43.5
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.4e-203 714.1 979 44.1
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.4e-203 714.1 947 44.7
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.4e-203 714.1 985 44.8
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 1.9e-203 713.8 936 46.3
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 4.1e-203 712.6 972 44.3
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 5.4e-203 712.2 977 44.5
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 7.1e-203 711.8 942 45.4
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.6e-202 710.7 972 44.7
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 2.7e-202 709.9 943 45.7
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 2.7e-202 709.9 943 45.1
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 3.5e-202 709.5 938 45.3
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 7.8e-202 708.4 980 43.9
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 7.8e-202 708.4 983 44.9
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 7.8e-202 708.4 985 44.5
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 5.1e-201 705.7 943 44.2
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 6.6e-201 705.3 943 44.9
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 6.6e-201 705.3 936 45.1
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 1.1e-200 704.5 944 44.7
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 1.1e-200 704.5 944 45.8
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.5e-200 704.1 981 44.5
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.5e-200 704.1 946 44.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 2.5e-200 703.4 943 44.5
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 2.5e-200 703.4 936 45.4
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 3.3e-200 703.0 942 45.4
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 1.2e-199 701.0 948 44.5
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 2.1e-199 700.3 948 44.8
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.1e-199 700.3 1016 43.8
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.8e-199 699.9 983 44.4
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 1.1e-198 698.0 944 44.3
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.8e-198 697.2 987 43.9
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 2.4e-198 696.8 944 44.6
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 3.1e-198 696.4 986 43.7
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 3.1e-198 696.4 948 44.6
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 8.9e-198 694.9 983 43.4
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 1.2e-197 694.5 978 42.0
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 1.5e-197 694.1 951 44.4
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.5e-197 694.1 943 44.6
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 2.0e-197 693.7 944 44.5
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 4.4e-197 692.6 977 44.4
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 1.3e-196 691.0 942 43.7
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 3.8e-196 689.5 958 43.6
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 6.4e-196 688.7 985 42.3
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 8.4e-196 688.3 1011 42.5
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.1e-195 688.0 1012 42.9
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.4e-195 687.6 942 43.8
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.4e-195 687.6 974 43.8
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.4e-195 687.6 946 43.7
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 1.9e-195 687.2 992 42.6
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 7.1e-195 685.3 944 44.0
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.6e-194 684.1 974 43.6
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 3.5e-194 682.9 878 46.6
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 3.5e-194 682.9 943 43.1
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 4.6e-194 682.6 981 43.8
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 4.6e-194 682.6 945 44.0
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 7.8e-194 681.8 966 43.5
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 5.1e-193 679.1 987 43.6
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 6.6e-193 678.7 942 43.7
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 6.6e-193 678.7 945 44.1
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 8.7e-193 678.3 808 49.0
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.1e-192 677.9 941 44.1
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 1.6e-191 674.1 870 44.6
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 2.1e-191 673.7 1044 41.3
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 3.1e-190 669.8 996 42.0
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 9.9e-189 664.8 945 43.0
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.7e-188 664.1 913 44.6
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 2.2e-188 663.7 994 42.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 6.4e-188 662.1 989 42.3
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 5.4e-187 659.1 961 43.6
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 9.3e-187 658.3 980 42.0
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 1.2e-186 657.9 940 42.1
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 2.3e-185 653.7 947 43.2
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 9.6e-184 648.3 841 45.5
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 2.8e-183 646.7 949 42.4
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 3.6e-183 646.4 965 42.0
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.4e-182 644.4 654 54.3
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 5.3e-182 642.5 685 50.9
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 5.8e-181 639.0 816 46.4
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 9.9e-181 638.3 946 42.1
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 2.2e-180 637.1 945 41.4
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 7.1e-179 632.1 915 43.5
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 6.7e-177 625.5 946 42.3
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 4.2e-163 579.7 970 38.0
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 9.0e-158 562.0 684 48.0
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 5.0e-156 556.2 682 47.7
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 6.3e-151 539.3 892 39.6
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.0e-148 531.9 746 44.6
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 8.2e-135 485.7 707 42.4
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 1.6e-130 471.5 530 50.4
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 4.4e-128 463.4 720 41.8
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 7.5e-128 462.6 513 49.9
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 2.3e-121 441.0 740 38.1
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 5.0e-100 370.2 460 45.2
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 8.1e-98 362.8 593 39.6
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 3.5e-93 347.4 942 30.5
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 2.4e-81 308.1 500 41.0
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.7e-76 292.0 830 28.1
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 1.2e-72 279.3 677 35.3
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 1.5e-72 278.9 332 46.4
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 4.6e-69 267.3 928 26.6
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 7.4e-67 260.0 252 54.4
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.8e-58 231.5 477 35.0
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 3.1e-57 228.0 382 40.3
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.1e-43 183.0 191 50.8
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 1.1e-43 183.0 238 45.4
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 2.6e-40 171.8 173 50.9
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 2.1e-37 162.2 175 49.1
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 7.9e-29 133.7 139 51.1
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 1.7e-26 125.9 603 23.5
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 8.5e-23 113.6 85 65.9
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 7.2e-14 84.0 342 24.3
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 8.0e-13 80.5 142 38.0
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 1.4e-12 79.7 114 41.2
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 1.8e-12 79.3 75 48.0
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.4e-11 74.7 83 49.4
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.4e-09 69.7 82 50.0
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.6e-08 66.2 111 38.7
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 7.7e-08 63.9 98 43.9
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 1.0e-07 63.5 204 24.0
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 1.0e-07 63.5 64 50.0
Carub.0001s0211 Capsella rubella HOM05D000319 ORTHO05D000903 1.7e-07 62.8 113 28.3
AT1G02980 Arabidopsis thaliana HOM05D000319 ORTHO05D000903 5.0e-07 61.2 185 24.9
AL1G12430 Arabidopsis lyrata HOM05D000319 ORTHO05D000903 1.5e-06 59.7 103 30.1
AT1G43140 Arabidopsis thaliana HOM05D000319 ORTHO05D000903 4.2e-06 58.2 132 25.8
TPR.G37000 Trifolium pratense HOM05D000319 ORTHO05D002646 5.5e-06 57.8 105 27.6
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 9.5e-06 57.0 100 28.0


User provided reference genes

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