Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 3.9e-177 625.9 368 100.0
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.1e-13 82.0 251 27.5
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.1e-13 82.0 251 27.5
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 8.1e-13 80.1 268 26.5
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 3.1e-12 78.2 257 25.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 6.8e-12 77.0 233 26.2
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.2e-11 76.3 267 25.8
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.2e-11 76.3 218 27.5
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 2.0e-11 75.5 233 27.5
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 2.6e-11 75.1 219 25.1
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 2.6e-11 75.1 294 23.8
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 3.4e-11 74.7 232 25.9
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 3.4e-11 74.7 263 25.1
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 4.4e-11 74.3 247 25.5
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 5.8e-11 73.9 219 25.1
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 5.8e-11 73.9 298 25.5
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 5.8e-11 73.9 260 24.2
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 7.5e-11 73.6 235 26.4
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 9.9e-11 73.2 230 27.0
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 9.9e-11 73.2 215 27.4
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.2e-10 72.0 243 27.6
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 3.7e-10 71.2 234 26.5
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 3.7e-10 71.2 237 25.7
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 6.4e-10 70.5 247 24.3
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 8.3e-10 70.1 219 25.1
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 8.3e-10 70.1 247 25.1
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 8.3e-10 70.1 233 25.3
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 8.3e-10 70.1 303 25.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 8.3e-10 70.1 230 26.1
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.3e-10 70.1 259 25.5
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 8.3e-10 70.1 233 25.3
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 8.3e-10 70.1 241 26.1
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.1e-09 69.7 295 25.1
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.1e-09 69.7 218 26.1
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.1e-09 69.7 218 26.1
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.4e-09 69.3 212 27.8
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 1.4e-09 69.3 220 25.5
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.4e-09 69.3 235 26.0
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.4e-09 69.3 262 25.6
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.4e-09 69.3 243 25.9
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.9e-09 68.9 227 26.0
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.4e-09 68.6 226 25.2
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 2.4e-09 68.6 306 24.5
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.2e-09 68.2 214 26.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 4.1e-09 67.8 219 27.4
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 5.4e-09 67.4 218 25.7
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 5.4e-09 67.4 219 24.7
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 7.1e-09 67.0 212 27.8
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 7.1e-09 67.0 228 25.4
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 7.1e-09 67.0 228 25.4
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 7.1e-09 67.0 215 26.5
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 7.1e-09 67.0 216 25.5
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 9.2e-09 66.6 212 26.9
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.2e-08 66.2 220 25.9
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.2e-08 66.2 237 23.6
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.6e-08 65.9 218 25.2
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.6e-08 65.9 214 24.8
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 1.6e-08 65.9 199 26.6
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.1e-08 65.5 216 25.9
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.1e-08 65.5 216 25.9
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 2.1e-08 65.5 251 22.7
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.1e-08 65.5 237 23.6
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.1e-08 65.5 242 24.0
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.7e-08 65.1 155 25.8
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 4.6e-08 64.3 241 24.5
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 4.6e-08 64.3 220 25.5
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 6.0e-08 63.9 224 23.2
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 6.0e-08 63.9 200 27.0
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 6.0e-08 63.9 218 25.7
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 7.8e-08 63.5 221 24.9
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 7.8e-08 63.5 343 21.3
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 7.8e-08 63.5 246 25.6
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 7.8e-08 63.5 170 24.1
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 7.8e-08 63.5 244 25.0
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.3e-07 62.8 216 25.0
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.3e-07 62.8 237 23.6
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.7e-07 62.4 224 26.3
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.7e-07 62.4 230 25.2
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 2.3e-07 62.0 91 37.4
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 3.0e-07 61.6 213 24.9
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 3.0e-07 61.6 305 23.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 3.0e-07 61.6 184 24.5
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.9e-07 61.2 204 23.5
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 3.9e-07 61.2 232 25.9
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 5.1e-07 60.8 202 24.8
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 5.1e-07 60.8 202 24.8
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 5.1e-07 60.8 202 24.8
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 5.1e-07 60.8 241 22.4
Nitab4.5_0000895g0210 Nicotiana tabacum HOM05D001779 ORTHO05D001753 5.1e-07 60.8 91 38.5
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 5.1e-07 60.8 89 38.2
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 6.6e-07 60.5 247 23.9
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 6.6e-07 60.5 85 32.9
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 6.6e-07 60.5 227 25.1
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 6.6e-07 60.5 227 25.1
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 8.6e-07 60.1 89 37.1
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 2.5e-06 58.5 309 22.3
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.5e-06 58.5 91 34.1
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 4.3e-06 57.8 234 23.5
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 7.3e-06 57.0 110 35.5
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 7.3e-06 57.0 317 21.1
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 7.3e-06 57.0 273 23.8
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 9.5e-06 56.6 91 35.2
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 9.5e-06 56.6 231 24.7


User provided reference genes

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