Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_4890 Physcomitrium patens HOM05D002058 ORTHO05D313512 4.5e-91 337.8 158 100.0
Glyma.05G183700 Glycine max HOM05D002058 ORTHO05D003758 5.8e-14 81.6 117 35.9
Glyma.08G141500 Glycine max HOM05D002058 ORTHO05D003758 5.8e-14 81.6 117 36.8
Psat7g051520 Pisum sativum HOM05D002058 ORTHO05D003758 5.8e-14 81.6 93 44.1
Sabra07G0068000 Salix brachista HOM05D002058 ORTHO05D003758 5.8e-14 81.6 103 39.8
Cpa.g.sc191.4 Carica papaya HOM05D002058 ORTHO05D003758 9.8e-14 80.9 108 38.9
Ca_17695_v3 Cicer arietinum L. HOM05D002058 ORTHO05D003758 9.8e-14 80.9 89 41.6
Potri.007G081000 Populus trichocarpa HOM05D002058 ORTHO05D003758 9.8e-14 80.9 103 39.8
THA.LOC104807723 Tarenaya hassleriana HOM05D002058 ORTHO05D003758 9.8e-14 80.9 103 40.8
Sed0006253 Sechium edule HOM05D002058 ORTHO05D003758 1.7e-13 80.1 108 38.0
Lj1g0011600 Lotus japonicus HOM05D002058 ORTHO05D003758 2.9e-13 79.3 107 38.3
Actinidia15623 Actinidia chinensis HOM05D002058 ORTHO05D003758 3.7e-13 79.0 111 36.0
Migut.H02438 Erythranthe guttata HOM05D002058 ORTHO05D003758 3.7e-13 79.0 94 42.6
CSS0010657 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 4.9e-13 78.6 128 35.9
Dinv00699 Davidia involucrata HOM05D002058 ORTHO05D003758 4.9e-13 78.6 108 38.0
HanXRQChr07g0189951 Helianthus annuus HOM05D002058 ORTHO05D003758 4.9e-13 78.6 94 41.5
MBI02_g18924_MAGBIO Magnolia biondii HOM05D002058 ORTHO05D003758 4.9e-13 78.6 115 36.5
VMungo0251G3029 Vigna mungo HOM05D002058 ORTHO05D003758 4.9e-13 78.6 117 35.0
arahy.Tifrunner.gnm1.ann1.91QE12 Arachis hypogaea HOM05D002058 ORTHO05D003758 6.4e-13 78.2 107 37.4
arahy.Tifrunner.gnm1.ann1.A4G237 Arachis hypogaea HOM05D002058 ORTHO05D003758 6.4e-13 78.2 107 37.4
arahy.Tifrunner.gnm1.ann1.MN9CK9 Arachis hypogaea HOM05D002058 ORTHO05D003758 6.4e-13 78.2 104 37.5
arahy.Tifrunner.gnm1.ann1.Q3FUVQ Arachis hypogaea HOM05D002058 ORTHO05D003758 6.4e-13 78.2 104 37.5
MBI05_g00332_MAGBIO Magnolia biondii HOM05D002058 ORTHO05D003758 6.4e-13 78.2 107 39.3
Lj4g0006731 Lotus japonicus HOM05D002058 ORTHO05D003758 8.3e-13 77.8 90 42.2
Sabra05G0069700 Salix brachista HOM05D002058 ORTHO05D003758 8.3e-13 77.8 108 38.9
TPR.G2181 Trifolium pratense HOM05D002058 ORTHO05D003758 8.3e-13 77.8 93 41.9
TAR381G1363 Trochodendron aralioides HOM05D002058 ORTHO05D003758 8.3e-13 77.8 107 38.3
ATR0564G104 Amborella trichopoda HOM05D002058 ORTHO05D003758 1.1e-12 77.4 94 41.5
Phvul.002G264800 Phaseolus vulgaris HOM05D002058 ORTHO05D003758 1.1e-12 77.4 117 35.0
SMO119G0070 Selaginella moellendorffii HOM05D002058 ORTHO05D003758 1.1e-12 77.4 90 45.6
Aa31LG7G14710 Aethionema arabicum HOM05D002058 ORTHO05D003758 1.4e-12 77.0 108 38.9
CiPaw.03G134200 Carya illinoinensis HOM05D002058 ORTHO05D003758 1.4e-12 77.0 107 39.3
CSS0016053 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 1.9e-12 76.6 128 35.9
Carub.0004s0108 Capsella rubella HOM05D002058 ORTHO05D003758 1.9e-12 76.6 109 38.5
Potri.005G084600 Populus trichocarpa HOM05D002058 ORTHO05D003758 1.9e-12 76.6 108 37.0
vmacro02939 Vaccinium macrocarpon HOM05D002058 ORTHO05D003758 1.9e-12 76.6 107 39.3
VMungo1309G0601 Vigna mungo HOM05D002058 ORTHO05D003758 1.9e-12 76.6 103 38.8
Aqoxy6G00470 Aquilegia oxysepala HOM05D002058 ORTHO05D003758 2.4e-12 76.3 113 36.3
CsaV3_6G042420 Cucumis sativus L. HOM05D002058 ORTHO05D003758 2.4e-12 76.3 108 37.0
HanXRQChr15g0477681 Helianthus annuus HOM05D002058 ORTHO05D003758 2.4e-12 76.3 98 42.9
Lsat_1_v5_gn_8_41580 Lactuca sativa HOM05D002058 ORTHO05D003758 2.4e-12 76.3 104 37.5
PSO541G4291 Papaver somniferum HOM05D002058 ORTHO05D003758 2.4e-12 76.3 98 41.8
PSO675G1375 Papaver somniferum HOM05D002058 ORTHO05D003758 2.4e-12 76.3 98 41.8
BcaC02g08751 Brassica carinata HOM05D002058 ORTHO05D003758 3.2e-12 75.9 103 37.9
A04p16530 Brassica napus HOM05D002058 ORTHO05D003758 3.2e-12 75.9 103 37.9
C04p51060 Brassica napus HOM05D002058 ORTHO05D003758 3.2e-12 75.9 103 37.9
BolC4t26699H Brassica oleracea HOM05D002058 ORTHO05D003758 3.2e-12 75.9 103 37.9
BraA04t17289Z Brassica rapa HOM05D002058 ORTHO05D003758 3.2e-12 75.9 103 37.9
MELO3C007485.2 Cucumis melo HOM05D002058 ORTHO05D003758 3.2e-12 75.9 108 37.0
PGR042G2519 Punica granatum HOM05D002058 ORTHO05D003758 3.2e-12 75.9 109 37.6
SEGI_03566 Sequoiadendron giganteum HOM05D002058 ORTHO05D003758 3.2e-12 75.9 90 45.6
Sc22g0001550 Simmondsia chinensis HOM05D002058 ORTHO05D003758 3.2e-12 75.9 102 39.2
arahy.Tifrunner.gnm1.ann1.JNA5NA Arachis hypogaea HOM05D002058 ORTHO05D003758 4.1e-12 75.5 94 41.5
arahy.Tifrunner.gnm1.ann1.WB0Z4U Arachis hypogaea HOM05D002058 ORTHO05D003758 4.1e-12 75.5 94 41.5
Lalb_Chr12g0203521 Lupinus albus HOM05D002058 ORTHO05D003758 4.1e-12 75.5 112 36.6
CDE04G1180 Ceratophyllum demersum HOM05D002058 ORTHO05D003758 5.4e-12 75.1 107 38.3
Dinv19485 Davidia involucrata HOM05D002058 ORTHO05D003758 5.4e-12 75.1 107 37.4
Thhalv10000262m.g Eutrema salsugineum HOM05D002058 ORTHO05D003758 5.4e-12 75.1 103 38.8
Manes.13G076034 Manihot esculenta HOM05D002058 ORTHO05D003758 5.4e-12 75.1 103 38.8
Nn5g28902 Nelumbo nucifera HOM05D002058 ORTHO05D003758 5.4e-12 75.1 98 39.8
Peaxi162Scf00359g00118 Petunia axillaris HOM05D002058 ORTHO05D003758 5.4e-12 75.1 97 41.2
THA.LOC104824858 Tarenaya hassleriana HOM05D002058 ORTHO05D003758 5.4e-12 75.1 103 39.8
EL10Ac6g13583 Beta vulgaris HOM05D002058 ORTHO05D003758 7.1e-12 74.7 98 40.8
BcaB06g27797 Brassica carinata HOM05D002058 ORTHO05D003758 7.1e-12 74.7 103 37.9
Carub.0007s0141 Capsella rubella HOM05D002058 ORTHO05D003758 7.1e-12 74.7 95 42.1
ClCG01G016150 Citrullus lanatus HOM05D002058 ORTHO05D003758 7.1e-12 74.7 108 36.1
ECA246G3653 Erigeron canadensis HOM05D002058 ORTHO05D003758 7.1e-12 74.7 94 42.6
Glyma.04G219300 Glycine max HOM05D002058 ORTHO05D003758 7.1e-12 74.7 90 41.1
Lsat_1_v5_gn_3_54081 Lactuca sativa HOM05D002058 ORTHO05D003758 7.1e-12 74.7 94 42.6
TWI74G1314 Tripterygium wilfordii HOM05D002058 ORTHO05D003758 7.1e-12 74.7 98 38.8
AT2G21940 Arabidopsis thaliana HOM05D002058 ORTHO05D003758 9.2e-12 74.3 103 38.8
CSS0049201 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 9.2e-12 74.3 102 38.2
Nitab4.5_0000904g0020 Nicotiana tabacum HOM05D002058 ORTHO05D003758 9.2e-12 74.3 97 41.2
Nitab4.5_0005865g0050 Nicotiana tabacum HOM05D002058 ORTHO05D003758 9.2e-12 74.3 97 41.2
TWI53G1219 Tripterygium wilfordii HOM05D002058 ORTHO05D003758 9.2e-12 74.3 98 38.8
Actinidia16044 Actinidia chinensis HOM05D002058 ORTHO05D003758 1.2e-11 73.9 94 40.4
AL4G11260 Arabidopsis lyrata HOM05D002058 ORTHO05D003758 1.2e-11 73.9 103 38.8
CSS0046386 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 1.2e-11 73.9 102 38.2
Oeu028369.1 Olea europaea HOM05D002058 ORTHO05D003758 1.2e-11 73.9 98 39.8
Oeu031975.1 Olea europaea HOM05D002058 ORTHO05D003758 1.2e-11 73.9 98 39.8
PSO170G0472 Papaver somniferum HOM05D002058 ORTHO05D003758 1.2e-11 73.9 98 39.8
CARHR113020 Cardamine hirsuta HOM05D002058 ORTHO05D003758 1.6e-11 73.6 108 37.0
PGR004G2752 Punica granatum HOM05D002058 ORTHO05D003758 1.6e-11 73.6 101 38.6
Sopen04g023190 Solanum pennellii HOM05D002058 ORTHO05D003758 1.6e-11 73.6 97 41.2
SGA_v2.0_scaffold51G18754 Striga asiatica HOM05D002058 ORTHO05D003758 1.6e-11 73.6 93 37.6
BolC1t00059H Brassica oleracea HOM05D002058 ORTHO05D003758 2.1e-11 73.2 95 37.9
CiPaw.15G010500 Carya illinoinensis HOM05D002058 ORTHO05D003758 2.1e-11 73.2 109 37.6
Ciclev10026159m.g Citrus clementina HOM05D002058 ORTHO05D003758 2.1e-11 73.2 89 42.7
COL.COLO4_11010 Corchorus olitorius HOM05D002058 ORTHO05D003758 2.1e-11 73.2 115 38.3
MELO3C020958.2 Cucumis melo HOM05D002058 ORTHO05D003758 2.1e-11 73.2 102 39.2
Dinv41011 Davidia involucrata HOM05D002058 ORTHO05D003758 2.1e-11 73.2 109 38.5
Dinv42694 Davidia involucrata HOM05D002058 ORTHO05D003758 2.1e-11 73.2 98 38.8
Lalb_Chr13g0296211 Lupinus albus HOM05D002058 ORTHO05D003758 2.1e-11 73.2 112 35.7
PGSC0003DMG400016553 Solanum tuberosum HOM05D002058 ORTHO05D003758 2.1e-11 73.2 93 43.0
Zm00001eb069000 Zea mays HOM05D002058 ORTHO05D003758 2.1e-11 73.2 118 34.7
CSS0024356 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.7e-11 72.8 102 38.2
CSS0038320 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.7e-11 72.8 102 38.2
CAN.G347.5 Capsicum annuum HOM05D002058 ORTHO05D003758 2.7e-11 72.8 93 43.0
Lj4C866G0 Lonicera japonica HOM05D002058 ORTHO05D003758 2.7e-11 72.8 94 41.5
Manes.12G142800 Manihot esculenta HOM05D002058 ORTHO05D003758 2.7e-11 72.8 89 40.4
HPP92_013371 Vanilla planifolia HOM05D002058 ORTHO05D003758 2.7e-11 72.8 98 38.8
Cc07_g16270 Coffea canephora HOM05D002058 ORTHO05D003758 3.5e-11 72.4 93 41.9
DCAR_001370 Daucus carota HOM05D002058 ORTHO05D003758 3.5e-11 72.4 98 40.8
Eucgr.I00321 Eucalyptus grandis HOM05D002058 ORTHO05D003758 3.5e-11 72.4 96 43.8
Lj4C925G5 Lonicera japonica HOM05D002058 ORTHO05D003758 3.5e-11 72.4 94 41.5
SMO119G0331 Selaginella moellendorffii HOM05D002058 ORTHO05D003758 3.5e-11 72.4 92 42.4
BcaNung05810 Brassica carinata HOM05D002058 ORTHO05D003758 4.6e-11 72.0 90 38.9
A01p00420 Brassica napus HOM05D002058 ORTHO05D003758 4.6e-11 72.0 90 38.9
BraA01t00050Z Brassica rapa HOM05D002058 ORTHO05D003758 4.6e-11 72.0 90 38.9
Cfa002756 Carpinus fangiana HOM05D002058 ORTHO05D003758 4.6e-11 72.0 94 39.4
Ciclev10002077m.g Citrus clementina HOM05D002058 ORTHO05D003758 4.6e-11 72.0 103 38.8
Os06g0225800 Oryza sativa ssp. japonica HOM05D002058 ORTHO05D003758 4.6e-11 72.0 107 35.5
SalBow6G0726 Salvia bowleyana HOM05D002058 ORTHO05D003758 4.6e-11 72.0 95 41.1
Solyc04g051860.3 Solanum lycopersicum HOM05D002058 ORTHO05D003758 4.6e-11 72.0 93 43.0
Atru.chr4.367 Acer truncatum HOM05D002058 ORTHO05D003758 6.0e-11 71.6 98 39.8
Haze_25044 Corylus avellana HOM05D002058 ORTHO05D003758 6.0e-11 71.6 94 38.3
Sp7g36340 Schrenkiella parvula HOM05D002058 ORTHO05D003758 6.0e-11 71.6 90 41.1
arahy.Tifrunner.gnm1.ann1.Q0PIRU Arachis hypogaea HOM05D002058 ORTHO05D003758 7.8e-11 71.2 94 39.4
CANSAT21G0083 Cannabis sativa HOM05D002058 ORTHO05D003758 7.8e-11 71.2 108 37.0
CARHR247190 Cardamine hirsuta HOM05D002058 ORTHO05D003758 7.8e-11 71.2 90 40.0
Duzib264G0944 Durio zibethinus HOM05D002058 ORTHO05D003758 7.8e-11 71.2 90 43.3
Sp4g01020 Schrenkiella parvula HOM05D002058 ORTHO05D003758 7.8e-11 71.2 93 39.8
Atru.chr13.1953 Acer truncatum HOM05D002058 ORTHO05D003758 1.0e-10 70.9 103 36.9
arahy.Tifrunner.gnm1.ann1.05U4MR Arachis hypogaea HOM05D002058 ORTHO05D003758 1.0e-10 70.9 94 39.4
MSTRG.2530 Avicennia marina HOM05D002058 ORTHO05D003758 1.0e-10 70.9 98 37.8
BcaNung00872 Brassica carinata HOM05D002058 ORTHO05D003758 1.0e-10 70.9 90 38.9
C01p00580 Brassica napus HOM05D002058 ORTHO05D003758 1.0e-10 70.9 90 38.9
CANSAT01G1563 Cannabis sativa HOM05D002058 ORTHO05D003758 1.0e-10 70.9 107 37.4
AUR62016280 Chenopodium quinoa HOM05D002058 ORTHO05D003758 1.0e-10 70.9 98 39.8
AUR62044024 Chenopodium quinoa HOM05D002058 ORTHO05D003758 1.0e-10 70.9 98 39.8
Pp3c13_16180 Physcomitrium patens HOM05D002058 ORTHO05D003758 1.0e-10 70.9 101 39.6
AL7G11580 Arabidopsis lyrata HOM05D002058 ORTHO05D003758 1.3e-10 70.5 90 40.0
Glyma.04G219200 Glycine max HOM05D002058 ORTHO05D003758 1.3e-10 70.5 94 38.3
Gorai.007G244500 Gossypium raimondii HOM05D002058 ORTHO05D003758 1.3e-10 70.5 95 42.1
QL06p032113 Quercus lobata HOM05D002058 ORTHO05D003758 1.3e-10 70.5 94 40.4
GSVIVG01022229001 Vitis vinifera HOM05D002058 ORTHO05D003758 1.3e-10 70.5 94 40.4
GSVIVG01013668001 Vitis vinifera HOM05D002058 ORTHO05D003758 1.7e-10 70.1 109 35.8
AT4G39540 Arabidopsis thaliana HOM05D002058 ORTHO05D003758 2.3e-10 69.7 90 40.0
FAN19G1247 Fragaria x ananassa HOM05D002058 ORTHO05D003758 2.3e-10 69.7 94 39.4
FAN23G2242 Fragaria x ananassa HOM05D002058 ORTHO05D003758 2.3e-10 69.7 94 39.4
FAN26G2241 Fragaria x ananassa HOM05D002058 ORTHO05D003758 2.3e-10 69.7 94 39.4
FAN28G1652 Fragaria x ananassa HOM05D002058 ORTHO05D003758 2.3e-10 69.7 94 39.4
MD01G1019500 Malus domestica HOM05D002058 ORTHO05D003758 2.3e-10 69.7 94 40.4
Potri.002G061100 Populus trichocarpa HOM05D002058 ORTHO05D003758 2.3e-10 69.7 90 42.2
Haze_17849 Corylus avellana HOM05D002058 ORTHO05D003758 3.0e-10 69.3 109 35.8
MD15G1332900 Malus domestica HOM05D002058 ORTHO05D003758 3.0e-10 69.3 94 40.4
Sed0006299 Sechium edule HOM05D002058 ORTHO05D003758 3.0e-10 69.3 102 37.3
Zm00001eb194410 Zea mays HOM05D002058 ORTHO05D003758 3.0e-10 69.3 94 38.3
Gohir.A11G198100 Gossypium hirsutum HOM05D002058 ORTHO05D003758 3.9e-10 68.9 95 41.1
Rhsim10G0150100 Rhododendron simsii HOM05D002058 ORTHO05D003758 3.9e-10 68.9 131 32.8
Atru.chr7.2034_Atru.chr7.2035 Acer truncatum HOM05D002058 ORTHO05D003758 5.1e-10 68.6 102 38.2
Aqoxy6G00741 Aquilegia oxysepala HOM05D002058 ORTHO05D003758 5.1e-10 68.6 94 37.2
Cre10.g436350 Chlamydomonas reinhardtii HOM05D002058 ORTHO05D003758 5.1e-10 68.6 97 36.1
Duzib147G0681 Durio zibethinus HOM05D002058 ORTHO05D003758 5.1e-10 68.6 95 40.0
Duzib264G1213 Durio zibethinus HOM05D002058 ORTHO05D003758 5.1e-10 68.6 115 36.5
Zm00001eb254940 Zea mays HOM05D002058 ORTHO05D003758 5.1e-10 68.6 94 38.3
Cfa018248 Carpinus fangiana HOM05D002058 ORTHO05D003758 6.6e-10 68.2 109 35.8
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 6.6e-10 68.2 78 47.4
Hund19655 Selenicereus undatus HOM05D002058 ORTHO05D003758 6.6e-10 68.2 99 39.4
Gohir.D12G256700 Gossypium hirsutum HOM05D002058 ORTHO05D003758 8.6e-10 67.8 117 35.0
QL02p035413 Quercus lobata HOM05D002058 ORTHO05D003758 8.6e-10 67.8 93 39.8
AUR62003305 Chenopodium quinoa HOM05D002058 ORTHO05D003758 1.1e-09 67.4 98 36.7
Hma1.2p1_0276F.1_g111080 Hydrangea macrophylla HOM05D002058 ORTHO05D003758 1.1e-09 67.4 109 35.8
Gohir.D11G233600 Gossypium hirsutum HOM05D002058 ORTHO05D003758 1.5e-09 67.0 95 41.1
Thecc.01G113000 Theobroma cacao HOM05D002058 ORTHO05D003758 1.9e-09 66.6 99 39.4
Ah.03g141350 Amaranthus hybridus HOM05D002058 ORTHO05D003758 2.5e-09 66.2 89 41.6
C01p06090 Brassica napus HOM05D002058 ORTHO05D003758 3.3e-09 65.9 90 38.9
Rhsim11G0089700 Rhododendron simsii HOM05D002058 ORTHO05D003758 3.3e-09 65.9 143 33.6
RcHm_v2.0_Chr2g0116521 Rosa chinensis HOM05D002058 ORTHO05D003758 3.3e-09 65.9 78 43.6
CiPaw.16G006300 Carya illinoinensis HOM05D002058 ORTHO05D003758 4.3e-09 65.5 94 39.4
Prupe.6G172800 Prunus persica HOM05D002058 ORTHO05D003758 4.3e-09 65.5 98 38.8
Eucgr.F02664 Eucalyptus grandis HOM05D002058 ORTHO05D003758 5.6e-09 65.1 105 36.2
Gohir.A12G255300 Gossypium hirsutum HOM05D002058 ORTHO05D003758 5.6e-09 65.1 101 37.6
Gorai.008G274900 Gossypium raimondii HOM05D002058 ORTHO05D003758 7.3e-09 64.7 101 36.6
PSO170G5931 Papaver somniferum HOM05D002058 ORTHO05D003758 1.2e-08 63.9 95 36.8
AagrBONN_evm.TU.Sc2ySwM_117.1659 Anthoceros agrestis HOM05D002058 ORTHO05D003758 2.8e-08 62.8 78 43.6
CBR_g2957 Chara braunii HOM05D002058 ORTHO05D003758 8.1e-08 61.2 89 38.2
BolC1t00605H Brassica oleracea HOM05D002058 ORTHO05D003758 1.1e-07 60.8 83 38.6
SHI11688 Sapria himalayana HOM05D002058 ORTHO05D003758 5.2e-07 58.5 125 28.8
PRCOL_00002616 Prasinoderma coloniale HOM05D002058 ORTHO05D003758 6.8e-07 58.2 77 41.6
ClCG02G001040 Citrullus lanatus HOM05D002058 ORTHO05D003758 1.5e-06 57.0 92 31.5
RcHm_v2.0_Chr2g0116491 Rosa chinensis HOM05D002058 ORTHO05D003758 9.9e-06 54.3 62 45.2


User provided reference genes

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