Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.1e-278 962.6 486 100.0
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.4e-212 743.0 430 88.6
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.3e-120 437.6 430 49.5
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 6.3e-120 435.3 430 49.3
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 2.4e-119 433.3 455 50.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 3.1e-119 433.0 442 50.0
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.2e-118 431.0 441 49.4
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 3.5e-118 429.5 442 49.5
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 2.3e-117 426.8 434 51.4
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.3e-117 426.8 441 49.4
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.8e-117 426.0 458 47.6
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.8e-117 426.0 425 48.5
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 5.0e-117 425.6 439 49.2
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.5e-116 424.1 443 49.7
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.5e-116 424.1 438 48.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.9e-116 423.7 441 49.4
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.2e-116 422.9 422 51.7
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.2e-116 422.9 450 48.9
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 4.2e-116 422.5 365 56.4
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 4.2e-116 422.5 454 47.1
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 7.2e-116 421.8 440 48.4
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 9.5e-116 421.4 449 49.2
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 9.5e-116 421.4 443 48.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 9.5e-116 421.4 399 51.9
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 2.1e-115 420.2 454 46.7
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 2.8e-115 419.9 444 49.3
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 3.6e-115 419.5 433 48.0
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 4.7e-115 419.1 449 49.4
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 6.1e-115 418.7 451 49.7
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 8.0e-115 418.3 439 48.1
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 1.4e-114 417.5 443 48.5
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.8e-114 417.2 368 53.8
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 2.3e-114 416.8 448 49.8
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 5.2e-114 415.6 455 47.7
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 2.0e-113 413.7 434 49.1
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 2.0e-113 413.7 415 49.6
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 2.0e-113 413.7 438 48.9
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 2.0e-113 413.7 455 47.7
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 2.0e-113 413.7 454 48.0
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 2.6e-113 413.3 441 47.4
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 3.4e-113 412.9 443 48.3
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 5.7e-113 412.1 458 46.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 7.5e-113 411.8 439 47.8
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.3e-112 411.0 429 47.3
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.7e-112 410.6 439 47.4
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.7e-112 410.6 440 49.3
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 2.2e-112 410.2 441 49.7
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.2e-112 410.2 408 50.2
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 2.2e-112 410.2 441 48.1
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.8e-112 409.8 439 47.8
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 2.8e-112 409.8 421 49.9
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 8.3e-112 408.3 443 47.9
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 8.3e-112 408.3 447 48.1
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.1e-111 407.9 445 47.6
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.4e-111 407.5 428 50.5
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.8e-111 407.1 429 49.9
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.8e-111 407.1 435 49.0
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.8e-111 407.1 434 48.6
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 3.1e-111 406.4 417 50.1
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 4.1e-111 406.0 449 48.1
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 4.1e-111 406.0 446 47.8
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 5.4e-111 405.6 443 47.4
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 9.2e-111 404.8 463 45.6
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 1.2e-110 404.4 444 46.2
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.6e-110 404.1 429 48.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 3.5e-110 402.9 429 50.3
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 4.5e-110 402.5 429 50.1
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 5.9e-110 402.1 456 46.7
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 5.9e-110 402.1 429 49.2
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 2.9e-109 399.8 451 48.6
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 2.9e-109 399.8 441 47.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 3.8e-109 399.4 444 45.9
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 3.8e-109 399.4 465 45.4
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 8.6e-109 398.3 439 47.2
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 5.6e-108 395.6 425 46.4
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 7.3e-108 395.2 437 46.2
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.2e-107 394.4 440 46.8
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 2.3e-106 390.2 435 48.5
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.2e-105 387.9 442 47.5
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 1.7e-104 384.0 454 46.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.2e-103 379.8 460 46.1
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.5e-100 370.9 408 47.5
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 6.4e-96 355.5 486 42.2
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 7.0e-95 352.1 433 43.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.9e-93 346.3 350 47.7
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 6.2e-91 339.0 450 42.7
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 1.2e-89 334.7 340 48.5
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.3e-85 321.2 308 52.9
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 2.0e-81 307.4 347 46.4
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.6e-81 307.0 451 41.2
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 7.6e-81 305.4 304 49.7
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 6.6e-77 292.4 327 45.6
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.6e-75 287.7 393 43.3
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 8.1e-75 285.4 290 51.0
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 4.0e-74 283.1 315 47.3
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 9.9e-73 278.5 309 47.6
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 1.3e-72 278.1 321 45.2
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 6.4e-72 275.8 317 46.1
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.4e-71 274.6 436 39.0
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 4.2e-71 273.1 315 46.0
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.2e-65 255.0 220 55.0
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.0e-57 227.6 310 40.6
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 9.9e-57 225.3 433 36.7
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.1e-52 211.8 232 48.7
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 3.3e-52 210.3 351 35.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 4.2e-47 193.4 201 49.3
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 3.9e-45 186.8 213 46.0
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.9e-44 184.5 241 42.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 3.7e-43 180.3 219 42.9
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.4e-42 177.6 212 43.9
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.9e-40 170.6 174 49.4
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 6.1e-38 162.9 209 43.5
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 5.5e-31 139.8 124 55.6
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 9.4e-31 139.0 147 44.9
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.7e-30 137.5 130 49.2
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 5.3e-26 123.2 137 48.9
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 3.6e-22 110.5 134 45.5
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 6.1e-22 109.8 418 26.3
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 7.4e-20 102.8 393 23.2
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 6.3e-19 99.8 89 52.8
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 8.2e-19 99.4 451 23.1
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 8.2e-19 99.4 127 44.1
Pp3c1_26240 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.1e-18 99.0 177 38.4
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.0e-16 92.4 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.6e-12 77.8 394 21.6
Pp3c14_8150 Physcomitrium patens HOM05D005800 ORTHO05D007636 5.7e-12 76.6 62 69.4
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 9.7e-12 75.9 128 40.6
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.9e-08 64.3 70 52.9


User provided reference genes

Program Settings