Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 2.0e-172 609.0 297 100.0
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 7.3e-119 431.0 294 69.0
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 2.1e-110 402.9 289 67.8
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 2.6e-108 396.0 290 63.4
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 7.1e-106 387.9 288 62.8
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 9.2e-106 387.5 288 62.5
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 3.5e-105 385.6 289 61.6
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 3.5e-105 385.6 289 61.6
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 6.0e-105 384.8 288 63.9
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 6.0e-105 384.8 289 61.6
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 7.8e-105 384.4 288 62.5
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 2.3e-104 382.9 288 61.5
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 3.0e-104 382.5 298 61.1
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 3.0e-104 382.5 296 61.5
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 3.9e-104 382.1 288 62.5
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 5.1e-104 381.7 295 61.0
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 6.6e-104 381.3 290 62.8
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 1.5e-103 380.2 295 59.7
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 1.5e-103 380.2 291 61.2
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.5e-103 380.2 289 60.6
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 1.9e-103 379.8 290 62.1
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 2.5e-103 379.4 296 60.5
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 3.3e-103 379.0 286 60.8
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 4.3e-103 378.6 288 61.1
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 5.6e-103 378.3 288 60.8
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 7.3e-103 377.9 296 60.1
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 9.6e-103 377.5 289 60.6
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 9.6e-103 377.5 288 61.1
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.2e-102 377.1 288 60.4
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 1.2e-102 377.1 288 61.1
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.1e-102 376.3 286 60.8
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.1e-102 376.3 286 60.8
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 3.6e-102 375.6 289 59.5
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 4.7e-102 375.2 286 60.8
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 4.7e-102 375.2 292 59.9
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 6.2e-102 374.8 288 60.1
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 8.1e-102 374.4 294 59.5
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 8.1e-102 374.4 294 59.5
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 8.1e-102 374.4 288 60.1
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.1e-101 374.0 296 61.1
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 1.4e-101 373.6 295 59.7
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.8e-101 373.2 289 58.8
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-101 372.9 294 59.2
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 3.1e-101 372.5 286 60.8
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 5.3e-101 371.7 288 60.4
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 5.3e-101 371.7 294 58.8
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 6.9e-101 371.3 287 58.9
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 6.9e-101 371.3 287 59.6
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.2e-100 370.5 294 58.8
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 2.6e-100 369.4 288 60.1
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 3.4e-100 369.0 290 58.3
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 7.6e-100 367.9 290 59.3
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 7.6e-100 367.9 289 59.5
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 1.7e-99 366.7 292 61.3
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 1.7e-99 366.7 288 58.7
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.9e-99 365.9 293 57.7
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 6.4e-99 364.8 302 57.9
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 8.4e-99 364.4 288 59.7
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 5.4e-98 361.7 288 59.0
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 7.1e-98 361.3 286 59.4
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 9.3e-98 360.9 290 59.3
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 1.2e-97 360.5 286 59.4
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 1.6e-97 360.1 290 57.6
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 2.1e-97 359.8 286 59.4
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 2.1e-97 359.8 304 56.2
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 2.7e-97 359.4 290 57.9
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 4.6e-97 358.6 290 57.6
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 4.6e-97 358.6 290 57.2
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 4.6e-97 358.6 279 59.5
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 6.0e-97 358.2 286 59.1
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 6.0e-97 358.2 286 59.1
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 2.3e-96 356.3 296 59.8
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 3.0e-96 355.9 289 56.7
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 3.0e-96 355.9 290 57.6
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 3.9e-96 355.5 306 54.9
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 1.9e-95 353.2 320 55.0
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 9.6e-95 350.9 283 58.7
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 1.6e-94 350.1 253 62.5
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 3.6e-94 349.0 297 55.6
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 4.8e-94 348.6 297 59.6
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 1.1e-93 347.4 330 54.2
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.8e-93 346.7 290 56.9
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 9.0e-93 344.4 311 54.3
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 2.0e-92 343.2 296 54.7
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 4.5e-92 342.0 289 55.0
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 7.6e-92 341.3 336 50.6
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 1.3e-91 340.5 288 54.2
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 2.2e-91 339.7 288 53.8
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 6.4e-91 338.2 288 53.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 5.4e-90 335.1 287 55.7
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 1.6e-89 333.6 290 53.1
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 2.1e-89 333.2 260 59.6
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.3e-88 330.5 285 52.3
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 3.0e-88 329.3 302 53.0
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 1.5e-87 327.0 296 52.0
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 4.8e-86 322.0 290 51.7
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 1.0e-80 304.3 288 53.5
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 5.8e-76 288.5 210 59.0
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 8.4e-75 284.6 257 56.0
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 3.7e-70 269.2 188 64.4
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 6.5e-67 258.5 190 58.9
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.2e-62 243.4 194 56.7
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 3.7e-54 216.1 189 54.5
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.4e-48 197.6 156 57.7
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 3.1e-45 186.4 142 60.6
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 2.1e-41 173.7 148 53.4
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 3.8e-35 152.9 144 52.1
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 8.0e-33 145.2 142 52.8
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 3.3e-26 123.2 279 29.4
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 8.0e-25 118.6 111 52.3
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 1.5e-23 114.4 102 52.9
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 4.5e-20 102.8 239 28.5
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 2.9e-19 100.1 285 24.9
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 8.0e-17 92.0 78 56.4
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 4.0e-16 89.7 60 66.7
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 6.8e-16 89.0 71 59.2
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.2e-15 88.2 76 56.6
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.8e-15 85.9 106 42.5


User provided reference genes

Program Settings