Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.3e-236 822.0 464 100.0
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.3e-236 822.0 464 100.0
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 2.5e-105 386.7 492 54.9
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 4.1e-100 369.4 326 68.4
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.5e-91 339.3 418 51.4
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 5.9e-91 339.0 269 64.3
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 2.2e-90 337.0 368 54.6
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 6.5e-90 335.5 309 58.9
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 6.5e-90 335.5 303 60.1
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 1.1e-89 334.7 345 55.4
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.5e-89 334.3 317 56.5
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 2.5e-89 333.6 265 64.2
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 7.2e-89 332.0 266 63.9
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 1.2e-88 331.3 300 59.0
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 1.2e-88 331.3 316 57.3
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 1.2e-88 331.3 269 62.1
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 1.2e-88 331.3 269 62.1
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 2.1e-88 330.5 301 59.1
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 2.7e-88 330.1 300 58.0
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 3.6e-88 329.7 309 58.6
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 4.7e-88 329.3 278 61.9
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 6.1e-88 328.9 309 57.6
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 6.1e-88 328.9 357 56.3
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 8.0e-88 328.6 307 58.3
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 8.0e-88 328.6 294 59.9
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.0e-87 328.2 372 51.3
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.0e-87 328.2 307 58.3
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 1.0e-87 328.2 308 57.8
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.0e-87 328.2 266 62.4
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 1.4e-87 327.8 292 60.3
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 1.4e-87 327.8 302 58.6
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 2.3e-87 327.0 358 53.6
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.3e-87 327.0 302 57.6
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 3.0e-87 326.6 352 50.9
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 4.0e-87 326.2 304 57.2
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 6.7e-87 325.5 265 63.4
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 8.8e-87 325.1 284 61.3
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 8.8e-87 325.1 283 58.7
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.1e-86 324.7 273 60.8
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.1e-86 324.7 273 60.8
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.1e-86 324.7 273 60.8
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 1.5e-86 324.3 314 56.4
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.5e-86 324.3 388 49.0
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.6e-86 323.6 307 58.0
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 3.3e-86 323.2 311 56.6
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 4.4e-86 322.8 381 52.2
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.4e-86 322.8 307 57.7
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 7.5e-86 322.0 306 57.2
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.5e-86 322.0 307 57.7
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 7.5e-86 322.0 304 56.9
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 7.5e-86 322.0 311 55.3
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 7.5e-86 322.0 262 63.0
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 7.5e-86 322.0 354 52.5
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.3e-85 321.2 302 57.3
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.7e-85 320.9 276 58.0
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.7e-85 320.9 383 53.5
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 1.7e-85 320.9 293 58.0
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 2.8e-85 320.1 304 56.9
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 4.8e-85 319.3 301 56.5
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 4.8e-85 319.3 314 55.4
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 4.8e-85 319.3 308 57.1
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.8e-84 317.4 338 52.7
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.8e-84 317.4 373 55.0
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 3.1e-84 316.6 266 60.9
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 3.1e-84 316.6 306 54.9
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 4.1e-84 316.2 299 55.2
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 7.0e-84 315.5 310 56.5
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 7.0e-84 315.5 306 55.9
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 9.1e-84 315.1 308 56.5
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 9.1e-84 315.1 305 56.4
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 1.6e-83 314.3 294 57.5
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 3.5e-83 313.2 287 58.9
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 4.5e-83 312.8 296 56.1
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 4.5e-83 312.8 357 50.1
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 4.5e-83 312.8 372 50.8
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.0e-82 311.6 265 60.8
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 2.2e-82 310.5 268 59.3
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 2.9e-82 310.1 294 56.5
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 2.9e-82 310.1 294 56.5
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 2.9e-82 310.1 267 58.1
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 2.9e-82 310.1 293 55.6
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 3.8e-82 309.7 303 56.1
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 8.5e-82 308.5 284 57.4
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 1.1e-81 308.1 294 56.1
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 1.1e-81 308.1 294 56.1
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 1.5e-81 307.8 279 56.3
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 1.5e-81 307.8 293 57.3
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 1.9e-81 307.4 370 49.2
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.5e-81 307.0 349 51.9
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 5.5e-81 305.8 283 57.2
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 7.2e-81 305.4 316 53.8
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 9.4e-81 305.1 392 48.7
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.1e-80 303.9 266 60.2
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.6e-80 303.1 317 54.9
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.2e-78 298.1 307 54.7
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 3.4e-78 296.6 307 52.8
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 4.4e-78 296.2 291 54.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 3.7e-77 293.1 286 54.9
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.4e-76 291.2 286 54.5
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 4.1e-76 289.7 408 46.3
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 7.0e-76 288.9 252 59.1
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 9.1e-76 288.5 356 48.6
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 2.0e-75 287.3 269 54.6
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-74 283.9 294 53.4
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 5.0e-74 282.7 292 51.0
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.9e-73 280.8 294 53.7
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 4.2e-73 279.6 338 51.2
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 9.5e-73 278.5 240 59.6
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 2.0e-67 260.8 267 50.9
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 3.8e-66 256.5 308 49.7
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-64 250.8 227 58.1
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 4.9e-61 239.6 350 45.1
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 3.5e-59 233.4 211 56.9
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 5.2e-55 219.5 263 48.7
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.7e-53 213.4 189 60.8
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 5.6e-49 199.5 153 60.8
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.8e-47 194.5 169 60.9
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.2e-47 193.0 162 57.4
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.1e-41 175.3 324 38.6
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.4e-36 156.4 138 62.3
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.1e-31 142.1 115 59.1
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 9.0e-23 112.5 221 41.2
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 2.9e-21 107.5 76 64.5
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 4.3e-17 93.6 320 26.6
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.8e-16 90.1 114 48.2
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.4e-15 87.8 453 31.1
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.3e-15 86.7 111 46.8
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 2.4e-12 77.8 59 57.6
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.7e-08 63.9 98 48.0
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 1.0e-05 55.8 47 57.4


User provided reference genes

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