Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.6e-49 196.8 98 100.0
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.5e-33 144.4 98 71.4
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.1e-22 109.0 99 59.6
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.5e-20 102.8 98 54.1
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 4.4e-20 101.3 93 53.8
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 4.4e-20 101.3 92 54.3
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 9.7e-20 100.1 96 55.2
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 9.7e-20 100.1 74 62.2
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.3e-19 99.8 92 53.3
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-19 99.8 92 50.0
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-19 99.8 92 50.0
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.2e-19 99.0 74 62.2
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.2e-19 99.0 74 62.2
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.2e-19 99.0 98 53.1
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 3.7e-19 98.2 92 52.2
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 3.7e-19 98.2 93 50.5
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 3.7e-19 98.2 96 50.0
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.7e-19 98.2 91 52.7
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.7e-19 98.2 94 50.0
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.7e-19 98.2 94 50.0
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.7e-19 98.2 94 50.0
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 4.8e-19 97.8 92 52.2
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 4.8e-19 97.8 92 54.3
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 4.8e-19 97.8 92 52.2
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 4.8e-19 97.8 94 48.9
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 4.8e-19 97.8 94 48.9
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 4.8e-19 97.8 92 50.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.8e-19 97.8 96 51.0
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 8.2e-19 97.1 74 59.5
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 8.2e-19 97.1 74 59.5
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 8.2e-19 97.1 92 54.3
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.1e-18 96.7 74 59.5
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.1e-18 96.7 92 52.2
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.1e-18 96.7 94 51.1
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.4e-18 96.3 92 53.3
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.4e-18 96.3 92 50.0
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.4e-18 96.3 92 50.0
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.4e-18 96.3 92 51.1
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.8e-18 95.9 74 59.5
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.8e-18 95.9 96 52.1
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 1.8e-18 95.9 92 51.1
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.8e-18 95.9 92 53.3
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.8e-18 95.9 92 50.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.8e-18 95.9 74 60.8
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 2.4e-18 95.5 92 50.0
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 2.4e-18 95.5 92 52.2
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 2.4e-18 95.5 92 53.3
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 2.4e-18 95.5 93 52.7
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.4e-18 95.5 73 58.9
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 3.1e-18 95.1 92 53.3
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 3.1e-18 95.1 74 58.1
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 3.1e-18 95.1 74 54.1
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 3.1e-18 95.1 92 52.2
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 3.1e-18 95.1 76 57.9
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 4.1e-18 94.7 97 50.5
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.1e-18 94.7 74 58.1
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 5.3e-18 94.4 98 50.0
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 5.3e-18 94.4 89 51.7
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 5.3e-18 94.4 92 50.0
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 5.3e-18 94.4 90 51.1
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 5.3e-18 94.4 76 56.6
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 5.3e-18 94.4 93 48.4
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 5.3e-18 94.4 93 52.7
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 5.3e-18 94.4 93 51.6
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.3e-18 94.4 91 50.5
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 7.0e-18 94.0 98 53.1
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 7.0e-18 94.0 74 58.1
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 9.1e-18 93.6 74 52.7
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.2e-17 93.2 89 49.4
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.2e-17 93.2 92 50.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.2e-17 93.2 93 50.5
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 1.6e-17 92.8 94 44.7
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.6e-17 92.8 92 48.9
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.6e-17 92.8 74 55.4
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.6e-17 92.8 88 50.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.0e-17 92.4 92 48.9
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 2.0e-17 92.4 74 55.4
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 2.0e-17 92.4 88 51.1
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.0e-17 92.4 92 50.0
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 2.0e-17 92.4 96 47.9
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 2.6e-17 92.0 94 50.0
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 2.6e-17 92.0 74 52.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.6e-17 92.0 94 48.9
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.6e-17 92.0 96 50.0
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.6e-17 92.0 98 50.0
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 2.6e-17 92.0 93 51.6
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 2.6e-17 92.0 100 48.0
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.5e-17 91.7 92 48.9
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.5e-17 91.7 92 48.9
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 3.5e-17 91.7 92 46.7
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 4.5e-17 91.3 74 58.1
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.5e-17 91.3 74 58.1
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.5e-17 91.3 74 56.8
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 4.5e-17 91.3 74 55.4
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.5e-17 91.3 92 46.7
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 4.5e-17 91.3 74 55.4
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 4.5e-17 91.3 96 49.0
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 7.7e-17 90.5 89 49.4
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 7.7e-17 90.5 91 50.5
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 7.7e-17 90.5 74 56.8
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.7e-17 90.5 91 48.4
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 7.7e-17 90.5 96 49.0
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.0e-16 90.1 92 50.0
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.0e-16 90.1 92 45.7
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.0e-16 90.1 97 46.4
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 1.3e-16 89.7 81 53.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.3e-16 89.7 91 48.4
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 1.3e-16 89.7 74 55.4
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.3e-16 89.7 92 47.8
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.7e-16 89.4 91 47.3
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.7e-16 89.4 74 54.1
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-16 89.4 79 50.6
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-16 89.4 79 50.6
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.2e-16 89.0 98 50.0
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.2e-16 89.0 91 47.3
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 2.9e-16 88.6 74 52.7
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.9e-16 88.6 93 46.2
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.9e-16 88.6 74 55.4
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 3.8e-16 88.2 92 46.7
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 5.0e-16 87.8 91 50.5
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.0e-16 87.8 74 54.1
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.0e-16 87.8 74 54.1
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 6.5e-16 87.4 73 56.2
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 6.5e-16 87.4 89 48.3
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 6.5e-16 87.4 89 48.3
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.5e-16 87.4 74 55.4
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.5e-16 87.4 92 45.7
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 6.5e-16 87.4 92 45.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 8.5e-16 87.0 98 43.9
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 8.5e-16 87.0 92 48.9
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.1e-15 86.7 98 43.9
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.1e-15 86.7 74 51.4
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.1e-15 86.7 94 45.7
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.1e-15 86.7 94 45.7
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.1e-15 86.7 94 46.8
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.5e-15 86.3 94 44.7
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 1.5e-15 86.3 74 52.7
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.5e-15 86.3 92 44.6
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.9e-15 85.9 74 52.7
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-15 85.5 92 46.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-15 85.1 92 45.7
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 3.2e-15 85.1 74 51.4
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 4.2e-15 84.7 100 44.0
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.2e-15 84.7 92 47.8
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.5e-15 84.3 74 51.4
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 7.2e-15 84.0 96 43.8
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-14 82.8 94 43.6
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.1e-14 82.4 98 46.9
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 2.7e-14 82.0 93 46.2
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 2.7e-14 82.0 96 42.7
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.0e-14 80.5 90 44.4
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.0e-13 80.1 81 43.2
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.4e-13 79.7 98 41.8
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 4.0e-13 78.2 80 50.0
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 6.8e-13 77.4 83 48.2
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.5e-12 76.3 73 47.9
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 2.6e-12 75.5 63 57.1
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 4.4e-12 74.7 62 58.1
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 5.7e-12 74.3 99 37.4
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 7.5e-12 73.9 62 56.5
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.7e-11 72.8 67 47.8
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.8e-11 72.0 77 49.4
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.4e-10 69.7 72 50.0
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 4.1e-10 68.2 80 46.2
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 7.0e-10 67.4 68 47.1
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.7e-09 65.5 61 49.2
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.0e-08 63.5 73 38.4
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 2.5e-07 58.9 71 43.7
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.2e-07 58.5 54 46.3
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 4.2e-07 58.2 62 45.2
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 1.6e-06 56.2 40 60.0
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 6.1e-06 54.3 52 51.9
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 6.1e-06 54.3 52 51.9


User provided reference genes

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