Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 0.0e+00 1255.7 714 100.0
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 7.3e-250 867.5 717 72.9
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 7.5e-37 159.8 137 56.9
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.9e-36 157.9 162 50.0
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.9e-36 157.1 137 56.9
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 6.4e-36 156.8 157 49.0
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 8.3e-36 156.4 157 49.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.4e-35 155.6 163 49.7
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.9e-35 155.2 136 56.6
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.4e-35 154.8 156 49.4
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 2.4e-35 154.8 185 44.9
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.4e-35 154.8 157 48.4
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.4e-35 154.8 136 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 4.1e-35 154.1 142 53.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 5.4e-35 153.7 157 48.4
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 5.4e-35 153.7 136 55.1
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 7.1e-35 153.3 187 44.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 7.1e-35 153.3 136 56.6
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 7.1e-35 153.3 157 48.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 9.2e-35 152.9 136 55.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 9.2e-35 152.9 136 56.6
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.2e-34 152.5 136 54.4
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-34 152.5 136 56.6
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.2e-34 152.5 137 57.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-34 151.8 196 43.4
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 2.1e-34 151.8 196 43.4
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 2.7e-34 151.4 136 53.7
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.5e-34 151.0 136 55.9
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.6e-34 150.6 177 46.3
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 4.6e-34 150.6 157 47.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 4.6e-34 150.6 199 42.7
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.0e-34 150.2 136 55.1
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 6.0e-34 150.2 136 53.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 7.8e-34 149.8 136 52.9
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 7.8e-34 149.8 136 54.4
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 7.8e-34 149.8 136 57.4
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 7.8e-34 149.8 217 43.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 7.8e-34 149.8 136 53.7
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 7.8e-34 149.8 139 51.8
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-33 149.4 130 56.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 1.0e-33 149.4 136 52.9
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.3e-33 149.1 136 55.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.7e-33 148.7 170 47.6
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.7e-33 148.7 136 55.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.0e-33 147.9 134 53.7
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.9e-33 147.5 136 54.4
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 5.1e-33 147.1 136 52.2
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.1e-33 147.1 136 53.7
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 8.6e-33 146.4 136 53.7
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 8.6e-33 146.4 134 53.7
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 8.6e-33 146.4 136 54.4
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 8.6e-33 146.4 137 56.2
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.1e-32 146.0 136 54.4
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-32 146.0 136 52.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.1e-32 146.0 136 53.7
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.5e-32 145.6 157 43.9
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.5e-32 145.6 136 52.9
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.5e-32 145.6 137 52.6
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.5e-32 145.6 136 52.9
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.5e-32 145.6 136 54.4
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.5e-32 145.6 136 53.7
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.9e-32 145.2 136 52.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.5e-32 144.8 136 54.4
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 2.5e-32 144.8 136 50.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.5e-32 144.8 136 52.9
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.3e-32 144.4 136 52.9
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.3e-32 144.4 136 54.4
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 4.3e-32 144.1 136 52.9
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 5.6e-32 143.7 136 53.7
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 5.6e-32 143.7 200 45.5
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 7.3e-32 143.3 136 53.7
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 9.5e-32 142.9 136 54.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 9.5e-32 142.9 136 53.7
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 9.5e-32 142.9 139 54.0
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 9.5e-32 142.9 126 53.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 9.5e-32 142.9 257 39.7
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 9.5e-32 142.9 139 53.2
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.2e-31 142.5 136 52.2
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.2e-31 142.5 137 55.5
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.6e-31 142.1 184 43.5
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.1e-31 141.7 177 44.6
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.8e-31 141.4 137 54.7
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.8e-31 141.4 136 52.2
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 2.8e-31 141.4 136 53.7
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 3.6e-31 141.0 136 53.7
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.7e-31 140.6 127 54.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.7e-31 140.6 137 52.6
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 4.7e-31 140.6 191 45.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.2e-31 140.2 136 52.9
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.2e-31 140.2 214 42.1
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.1e-30 139.4 128 55.5
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.4e-30 139.0 136 52.9
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.8e-30 138.7 136 51.5
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.3e-30 138.3 134 48.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.3e-30 138.3 202 39.1
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 4.0e-30 137.5 207 41.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.0e-30 137.5 195 42.1
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 4.0e-30 137.5 223 40.8
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 5.2e-30 137.1 207 44.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.2e-30 137.1 365 30.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.2e-29 136.0 192 41.1
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.2e-29 136.0 138 51.4
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.2e-29 136.0 138 51.4
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.2e-29 136.0 216 43.1
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.0e-29 135.2 207 44.0
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.0e-29 135.2 219 41.6
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.6e-29 134.8 192 40.1
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 2.6e-29 134.8 138 52.2
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.4e-29 134.4 223 40.4
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.4e-29 134.4 203 39.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 5.8e-29 133.7 132 53.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.3e-28 132.5 137 49.6
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.7e-28 132.1 188 38.3
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 2.2e-28 131.7 207 39.6
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 2.2e-28 131.7 221 39.4
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.2e-28 131.7 127 53.5
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.9e-28 131.3 210 41.9
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.7e-28 131.0 224 41.1
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 4.9e-28 130.6 125 52.8
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.1e-27 129.4 617 29.2
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.4e-27 128.3 310 35.2
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.4e-27 128.3 590 29.2
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.2e-27 127.9 192 41.1
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.2e-27 127.9 124 51.6
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 7.1e-27 126.7 219 39.3
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-26 125.6 135 46.7
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.1e-26 125.2 259 37.1
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 3.5e-26 124.4 104 57.7
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 6.0e-26 123.6 130 50.8
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.0e-25 122.9 247 36.4
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.9e-24 118.6 218 35.8
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.9e-24 118.6 101 54.5
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.9e-24 118.6 139 46.8
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 2.5e-24 118.2 322 31.7
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 4.7e-23 114.0 131 43.5
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.4e-22 112.5 94 55.3
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.9e-22 109.8 127 45.7
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 8.7e-17 93.2 133 44.4
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.8e-14 85.5 95 45.3
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 3.1e-14 84.7 218 32.1
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-13 82.4 95 44.2
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.3e-09 69.3 66 47.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.1e-07 62.0 136 31.6
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.8e-07 61.6 58 53.4
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 4.0e-06 57.8 137 29.2
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 4.0e-06 57.8 242 28.1


User provided reference genes

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