Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 0.0e+00 1192.9 686 100.0
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.4e-258 896.3 701 76.0
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 4.9e-251 871.3 691 73.7
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 8.1e-129 465.3 630 51.9
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.5e-122 443.7 728 46.8
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.7e-118 431.0 738 48.8
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 6.4e-118 429.1 737 47.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 6.4e-118 429.1 727 42.5
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.9e-115 419.9 761 46.1
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 1.5e-114 417.9 718 51.3
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.8e-113 413.7 728 42.6
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 3.6e-113 413.3 739 45.1
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.1e-112 411.8 716 47.1
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.0e-112 409.8 790 41.9
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 2.6e-111 407.1 420 53.1
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 3.8e-110 403.3 782 42.7
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.6e-105 387.9 441 49.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 6.2e-105 386.0 735 43.9
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.2e-102 377.5 440 49.8
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.4e-102 375.9 778 39.8
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.4e-101 374.8 440 49.8
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.4e-101 374.8 429 49.9
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.2e-101 373.6 692 44.9
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 9.3e-101 372.1 439 53.5
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 9.3e-101 372.1 439 53.5
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.8e-99 367.9 435 49.0
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.5e-98 364.8 447 48.1
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.5e-98 364.0 771 41.6
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.6e-95 354.0 410 47.8
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 7.6e-95 352.4 482 45.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.1e-93 348.6 434 49.5
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.4e-93 347.4 453 48.1
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.1e-92 344.4 426 48.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.9e-91 340.1 746 41.8
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.1e-91 339.7 430 49.1
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.1e-90 338.6 751 41.8
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 8.2e-89 332.4 465 46.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-88 331.6 721 37.9
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.4e-88 331.6 416 47.4
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.8e-88 331.3 758 41.8
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 4.0e-88 330.1 414 48.3
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.9e-88 329.3 742 41.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 6.9e-88 329.3 731 39.3
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 4.5e-87 326.6 434 47.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 7.6e-87 325.9 417 47.7
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.7e-86 324.7 744 41.0
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.1e-85 322.0 766 38.0
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-85 321.6 739 38.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.9e-85 321.2 725 41.2
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.1e-85 319.3 754 40.5
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.2e-84 318.5 820 38.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.6e-84 318.2 409 48.2
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 6.0e-84 316.2 679 42.1
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.0e-83 315.5 424 47.6
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.8e-81 307.4 845 38.0
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 2.8e-81 307.4 392 47.7
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 6.3e-81 306.2 393 47.8
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 2.0e-79 301.2 418 47.4
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 7.6e-79 299.3 416 46.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 1.7e-78 298.1 429 45.0
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.1e-77 295.4 412 46.6
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 9.4e-77 292.4 428 45.6
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.2e-76 292.0 347 51.0
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 2.1e-76 291.2 445 44.5
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 7.9e-76 289.3 443 44.9
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.8e-75 288.1 425 45.9
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.8e-75 288.1 394 45.9
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.5e-74 285.0 455 44.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.5e-74 284.3 467 40.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.7e-73 281.6 416 44.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.7e-73 281.6 386 47.2
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.8e-73 280.8 430 44.0
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.8e-73 280.0 376 47.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 4.8e-73 280.0 393 45.0
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 6.3e-73 279.6 369 46.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.4e-72 277.7 388 46.6
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 4.1e-72 276.9 383 47.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 9.1e-72 275.8 466 42.9
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.0e-71 274.6 435 43.9
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 2.0e-71 274.6 423 42.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 2.6e-71 274.2 411 43.6
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 3.4e-71 273.9 390 46.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 7.7e-71 272.7 459 42.7
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.7e-70 271.6 366 45.6
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 2.2e-70 271.2 478 42.3
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.9e-70 270.8 731 36.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 3.8e-70 270.4 384 45.8
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 8.5e-70 269.2 386 46.1
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.9e-69 268.1 316 48.7
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.2e-68 265.4 450 41.3
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.7e-68 264.2 385 47.3
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.0e-67 262.3 739 37.5
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.9e-67 260.4 417 43.9
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 6.7e-67 259.6 484 39.0
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.5e-66 258.5 712 39.2
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.5e-66 258.5 348 47.4
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.5e-66 258.5 338 46.7
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.7e-65 255.0 431 42.9
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.8e-65 254.2 482 39.2
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 6.3e-65 253.1 433 42.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.0e-64 249.6 361 46.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 9.1e-64 249.2 211 62.6
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 4.5e-63 246.9 294 49.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 5.9e-63 246.5 380 43.4
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.7e-62 245.0 364 44.2
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.2e-62 244.6 256 54.3
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 2.9e-62 244.2 380 43.2
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.9e-62 244.2 256 53.1
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 6.5e-62 243.0 430 40.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 3.2e-61 240.7 362 45.6
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 3.2e-61 240.7 362 45.6
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.2e-60 238.8 364 44.0
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.6e-60 238.4 402 42.0
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.6e-58 231.1 450 39.1
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.4e-56 225.3 439 40.8
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 8.5e-54 216.1 346 44.5
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.1e-53 215.7 372 40.9
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.5e-53 215.3 353 40.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.5e-53 215.3 426 39.0
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.5e-53 214.5 329 40.7
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-52 211.8 443 37.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-51 209.1 444 37.2
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.4e-51 208.8 175 60.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.4e-51 208.8 330 42.1
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 7.5e-50 203.0 142 71.8
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.2e-49 201.4 196 52.6
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 4.1e-48 197.2 314 41.1
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.6e-47 195.3 132 72.0
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.7e-47 194.5 367 38.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.7e-46 191.8 198 51.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 4.0e-43 180.6 424 33.5
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.3e-41 172.9 197 49.7
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.1e-37 162.5 166 51.2
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.5e-37 162.2 157 53.5
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.6e-36 157.5 194 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 8.0e-36 156.4 252 40.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 8.0e-36 156.4 136 52.9
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.0e-35 154.5 146 54.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.4e-34 150.6 136 55.9
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.4e-32 144.8 196 44.4
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 1.6e-28 132.1 264 38.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.2e-23 115.9 84 70.2
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.0e-22 112.8 84 69.0
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 1.2e-20 105.9 96 56.2
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 6.4e-17 93.6 71 62.0
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 8.1e-12 76.6 62 58.1
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.2e-10 72.8 166 31.9
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 3.7e-09 67.8 118 32.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 6.4e-09 67.0 100 40.0
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 7.8e-07 60.1 103 40.8


User provided reference genes

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