Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.2e-135 486.5 251 100.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.8e-122 440.7 279 84.9
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.5e-120 436.4 251 90.8
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.3e-113 412.5 249 87.6
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.7e-108 396.4 250 82.4
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 2.1e-103 379.4 248 81.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 8.1e-103 377.5 245 80.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.4e-102 376.7 251 76.1
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 4.0e-102 375.2 251 77.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.2e-102 374.8 223 83.4
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 6.8e-102 374.4 249 78.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-101 372.9 249 76.3
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-101 372.9 249 76.3
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 3.8e-100 368.6 250 78.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.9e-100 368.2 253 76.7
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.9e-100 368.2 253 76.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 6.4e-100 367.9 242 79.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 8.4e-100 367.5 253 76.3
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.9e-99 366.3 245 78.0
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.7e-98 362.5 247 75.7
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.5e-98 362.1 248 76.2
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.0e-98 361.3 239 77.8
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.0e-97 360.5 249 76.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.7e-97 359.8 232 79.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.3e-97 359.4 234 79.1
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 3.9e-97 358.6 261 74.7
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.9e-97 358.6 242 78.1
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 5.1e-97 358.2 226 80.5
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 6.6e-97 357.8 226 81.0
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 6.6e-97 357.8 227 82.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 8.7e-97 357.5 242 76.4
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.1e-96 357.1 235 78.3
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.1e-96 357.1 254 74.8
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.5e-96 355.9 219 84.0
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.3e-96 355.5 217 82.9
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 7.3e-96 354.4 235 78.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.3e-95 353.6 242 74.8
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.3e-95 353.6 216 83.8
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.3e-95 353.6 216 83.8
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.3e-95 353.6 216 83.3
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.6e-95 353.2 243 73.7
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.1e-95 352.8 246 75.6
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.6e-95 352.1 239 76.6
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 4.8e-95 351.7 241 73.0
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.1e-94 350.5 250 74.8
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.1e-94 350.5 228 80.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.8e-94 349.7 249 75.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.8e-94 349.7 226 79.6
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 6.9e-94 347.8 226 79.2
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.6e-93 345.9 241 73.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 5.8e-93 344.7 255 72.9
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 7.6e-93 344.4 234 77.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 7.6e-93 344.4 244 74.6
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 7.6e-93 344.4 227 77.1
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.7e-92 343.2 232 77.2
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 2.2e-92 342.8 233 75.5
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.2e-92 342.8 211 82.9
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 3.8e-92 342.0 224 76.8
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 6.4e-92 341.3 223 78.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.4e-92 341.3 248 73.0
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.4e-91 340.1 230 78.7
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.4e-91 340.1 231 74.5
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.4e-91 339.3 245 75.5
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.4e-91 339.3 227 78.4
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 2.4e-91 339.3 244 73.4
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 4.2e-91 338.6 229 78.2
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 4.2e-91 338.6 227 76.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.2e-91 338.6 227 76.2
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.2e-91 338.6 227 76.2
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 4.2e-91 338.6 227 77.1
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 5.4e-91 338.2 230 77.8
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 7.1e-91 337.8 230 78.3
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 7.1e-91 337.8 230 77.8
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 9.3e-91 337.4 215 79.1
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.2e-90 337.0 230 77.4
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.2e-90 337.0 206 85.0
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-90 336.7 227 75.8
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.6e-90 336.7 230 78.3
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.1e-90 336.3 227 76.7
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 2.1e-90 336.3 231 72.7
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.7e-90 335.9 230 77.4
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 4.6e-90 335.1 206 84.5
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.9e-90 334.3 225 76.9
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.7e-89 333.2 227 77.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 6.6e-89 331.3 231 75.8
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.1e-88 330.5 265 66.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-88 330.1 228 76.8
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.9e-88 329.7 250 71.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.5e-88 329.3 217 76.0
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 4.3e-88 328.6 227 76.2
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.6e-87 326.6 246 69.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.6e-87 326.6 242 68.2
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.8e-87 325.9 242 69.8
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.1e-87 324.3 240 70.8
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.4e-86 322.8 239 69.5
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 3.1e-86 322.4 232 74.1
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.1e-86 322.4 326 57.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 5.3e-86 321.6 215 77.2
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 2.6e-85 319.3 226 75.2
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.3e-84 317.0 218 74.8
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 4.9e-84 315.1 231 72.7
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 6.4e-84 314.7 204 80.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.6e-82 310.1 189 81.5
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.5e-80 303.5 165 91.5
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 6.0e-74 281.6 234 65.4
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.9e-72 276.6 244 59.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.2e-71 271.6 209 69.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.5e-69 265.4 209 67.0
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 3.8e-68 262.3 228 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.4e-62 243.8 208 59.6
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.0e-60 237.7 192 62.0
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-60 236.5 142 80.3
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.5e-52 208.4 165 61.8
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.6e-50 203.8 196 53.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.7e-50 203.0 186 55.9
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.0e-49 201.1 205 51.7
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.9e-45 185.3 218 46.3
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.9e-43 180.3 175 52.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 6.7e-41 171.8 116 78.4
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-40 171.0 143 64.3
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.1e-34 150.2 158 55.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 7.2e-27 125.2 143 42.0
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.7e-23 112.8 65 86.2
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.6e-18 96.3 89 64.0
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 4.0e-17 92.8 97 54.6
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 9.8e-16 88.2 53 81.1


User provided reference genes

Program Settings