Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G148132 Populus trichocarpa HOM05D000002 ORTHO05D006339 1.1e-201 706.4 361 100.0
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.0e-179 632.5 363 89.3
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 2.5e-177 625.5 363 88.2
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 2.8e-157 558.9 363 78.2
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 5.9e-155 551.2 362 77.6
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 3.8e-154 548.5 363 79.1
TAR369G0907 Trochodendron aralioides HOM05D000002 ORTHO05D006339 6.1e-152 541.2 363 76.6
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 5.1e-151 538.1 364 75.0
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 2.6e-150 535.8 363 75.8
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 2.8e-149 532.3 362 74.9
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 1.4e-148 530.0 362 75.7
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 5.3e-148 528.1 362 76.2
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 5.3e-148 528.1 362 76.2
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 1.6e-147 526.6 362 75.1
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 2.0e-147 526.2 363 75.2
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 3.5e-147 525.4 362 74.9
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 5.9e-147 524.6 366 74.0
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 1.1e-145 520.4 363 74.7
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 1.5e-145 520.0 363 74.7
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 1.2e-144 516.9 361 72.6
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 1.6e-144 516.5 362 73.8
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 2.7e-144 515.8 362 72.7
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 1.4e-143 513.5 369 72.6
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 1.4e-143 513.5 362 72.4
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 4.0e-143 511.9 363 71.1
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 1.5e-142 510.0 362 73.2
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 2.0e-142 509.6 362 72.1
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 2.6e-142 509.2 361 71.2
Hma1.2p1_0269F.1_g107870 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 2.8e-141 505.8 360 73.1
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 3.7e-141 505.4 363 72.5
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 6.3e-141 504.6 368 73.6
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 1.4e-140 503.4 363 72.7
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 2.4e-140 502.7 362 71.8
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 9.1e-140 500.7 363 71.6
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 2.0e-139 499.6 362 71.8
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 5.9e-139 498.0 362 72.1
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 7.7e-139 497.7 366 70.2
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 7.7e-139 497.7 361 70.9
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 1.0e-138 497.3 365 71.2
Lj6A285T31 Lonicera japonica HOM05D000002 ORTHO05D006339 1.3e-138 496.9 366 70.8
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 3.8e-138 495.4 363 70.8
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 6.5e-138 494.6 364 71.2
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 8.5e-138 494.2 363 71.6
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 1.5e-137 493.4 363 71.6
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 3.2e-137 492.3 363 70.0
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 4.2e-137 491.9 363 70.5
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 5.5e-137 491.5 363 70.2
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 9.4e-137 490.7 362 71.0
Migut.O00915 Erythranthe guttata HOM05D000002 ORTHO05D006339 9.4e-137 490.7 364 70.9
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.2e-136 490.3 363 68.9
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 2.1e-136 489.6 364 70.3
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 2.7e-136 489.2 362 69.9
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 3.6e-136 488.8 363 70.0
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 8.0e-136 487.6 349 73.4
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 1.0e-135 487.3 365 69.3
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 1.0e-135 487.3 365 69.3
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 2.3e-135 486.1 366 70.2
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 2.3e-135 486.1 365 69.3
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 2.3e-135 486.1 366 68.9
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 8.8e-135 484.2 363 68.9
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 8.8e-135 484.2 364 69.2
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 1.2e-134 483.8 364 68.7
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 1.2e-134 483.8 364 67.3
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 1.5e-134 483.4 362 69.9
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 2.0e-134 483.0 362 69.1
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 2.0e-134 483.0 369 70.2
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 2.6e-134 482.6 364 70.3
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 3.4e-134 482.3 363 70.0
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 5.7e-134 481.5 364 70.1
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 7.5e-134 481.1 362 71.0
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 7.5e-134 481.1 362 71.0
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 1.1e-132 477.2 362 68.2
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 1.4e-132 476.9 369 66.1
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 1.4e-132 476.9 366 68.6
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 2.4e-132 476.1 365 68.5
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 2.4e-132 476.1 363 68.3
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 9.1e-132 474.2 363 66.1
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 1.2e-131 473.8 363 67.8
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.6e-131 473.4 365 66.6
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 2.7e-131 472.6 364 67.6
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.3e-130 470.3 361 69.5
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 1.7e-130 469.9 363 67.5
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.9e-130 469.2 367 69.2
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 5.0e-130 468.4 362 69.3
arahy.Tifrunner.gnm1.ann1.TJ5BAV Arachis hypogaea HOM05D000002 ORTHO05D006339 1.1e-129 467.2 383 65.3
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 1.9e-129 466.5 351 68.9
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 9.4e-129 464.2 363 68.6
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 1.2e-128 463.8 362 67.1
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-127 460.3 346 68.5
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 2.0e-126 456.4 362 65.2
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 1.0e-122 444.1 362 63.5
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 1.0e-122 444.1 339 69.0
ATR0626G089 Amborella trichopoda HOM05D000002 ORTHO05D006339 7.3e-121 438.0 369 63.7
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 4.0e-119 432.2 315 72.7
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 1.4e-116 423.7 337 67.4
MBI15_g00655_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 1.8e-116 423.3 315 70.5
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 1.2e-115 420.6 314 69.7
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 1.7e-114 416.8 364 61.0
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 6.6e-114 414.8 352 64.5
unitig_747.g21292 Utricularia gibba HOM05D000002 ORTHO05D006339 4.3e-113 412.1 362 59.9
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 8.0e-112 407.9 321 66.0
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 3.1e-111 406.0 321 65.7
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 2.0e-110 403.3 368 56.5
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 8.1e-104 381.3 363 59.5
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 2.6e-102 376.3 363 59.2
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 3.8e-93 345.9 345 56.5
FAN17G1253 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.1e-88 330.1 313 61.3
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 2.3e-82 310.1 362 52.5
AagrBONN_evm.TU.Sc2ySwM_340.348 Anthoceros agrestis HOM05D000002 ORTHO05D006339 5.1e-82 308.9 368 46.7
Mapoly0004s0293 Marchantia polymorpha HOM05D000002 ORTHO05D006339 7.3e-81 305.1 371 46.4
Pp3c7_4500 Physcomitrium patens HOM05D000002 ORTHO05D006339 1.8e-79 300.4 372 43.8
SMO361G0562 Selaginella moellendorffii HOM05D000002 ORTHO05D006339 4.2e-76 289.3 369 45.5
CBR_g5707 Chara braunii HOM05D000002 ORTHO05D006339 1.3e-74 284.3 406 40.9
Lj4C850T7 Lonicera japonica HOM05D000002 ORTHO05D006339 9.9e-70 268.1 281 56.6
Cpa.g.sc74.40 Carica papaya HOM05D000002 ORTHO05D006339 8.2e-56 221.9 284 48.2
Cre10.g466250 Chlamydomonas reinhardtii HOM05D000002 ORTHO05D006339 9.4e-44 181.8 462 29.0
RcHm_v2.0_Chr4g0397331 Rosa chinensis HOM05D000002 ORTHO05D006339 1.1e-39 168.3 125 69.6
MCO04G295 Micromonas commoda HOM05D000002 ORTHO05D006339 9.1e-39 165.2 365 31.5
RcHm_v2.0_Chr4g0397341 Rosa chinensis HOM05D000002 ORTHO05D006339 1.7e-37 161.0 87 83.9
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 1.4e-34 151.4 78 91.0
Ca_25605_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 7.0e-23 112.5 92 64.1
Actinidia19421 Actinidia chinensis HOM05D000002 ORTHO05D006339 1.7e-16 91.3 79 67.1
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.9e-06 56.2 143 28.0


User provided reference genes

Program Settings