Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.6e-288 995.3 478 100.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 3.4e-259 897.9 478 87.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 7.6e-259 896.7 475 89.1
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-258 894.8 480 88.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-258 894.8 480 88.5
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.7e-258 894.4 475 89.3
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.7e-258 894.4 480 88.1
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.9e-257 892.1 480 87.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 4.1e-257 891.0 475 88.8
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 4.1e-257 891.0 478 88.3
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 7.1e-257 890.2 475 88.8
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 9.2e-257 889.8 478 87.2
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.1e-256 888.6 479 87.3
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 5.1e-255 884.0 478 87.0
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 8.6e-255 883.2 479 86.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.5e-254 882.5 479 86.4
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.9e-254 882.1 481 87.9
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.6e-254 880.6 482 86.5
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 7.3e-254 880.2 478 87.2
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 7.3e-254 880.2 479 86.2
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.8e-253 878.2 475 86.5
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.4e-252 875.9 475 86.5
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.4e-252 875.9 478 86.4
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.8e-252 875.5 483 85.7
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.8e-252 875.5 479 85.4
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.0e-252 874.4 478 85.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 8.9e-252 873.2 478 86.0
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.5e-251 872.5 475 86.1
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.0e-251 872.1 479 86.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 3.4e-251 871.3 477 86.0
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 3.4e-251 871.3 478 85.4
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 7.6e-251 870.2 478 85.6
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.3e-250 869.4 479 85.0
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.9e-250 868.2 478 84.9
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 3.8e-250 867.8 478 85.6
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.9e-249 865.5 479 85.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 9.3e-249 863.2 478 84.1
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.2e-248 862.8 476 84.9
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.7e-248 861.7 485 83.9
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.6e-248 860.9 478 84.7
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.6e-248 860.9 476 84.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.3e-247 859.4 478 85.4
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.7e-247 859.0 478 83.9
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 3.0e-247 858.2 483 84.5
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.1e-246 856.3 474 85.2
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.1e-246 856.3 494 82.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.9e-246 855.5 479 85.4
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 7.3e-246 853.6 479 85.2
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 7.3e-246 853.6 478 83.1
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 9.6e-246 853.2 478 83.7
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.3e-245 852.8 458 87.1
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.3e-245 852.8 479 83.9
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.1e-245 852.0 478 82.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.1e-245 852.0 476 84.2
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 3.6e-245 851.3 480 84.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.8e-245 850.9 475 85.7
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.1e-244 849.7 478 83.3
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.4e-244 849.4 478 83.3
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.4e-244 849.4 478 83.1
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.4e-244 849.4 485 82.9
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 9.0e-244 846.7 479 82.7
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.4e-243 844.7 479 82.7
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 5.8e-243 844.0 479 82.3
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 5.8e-243 844.0 479 83.7
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 7.6e-243 843.6 472 84.1
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 7.6e-243 843.6 479 82.7
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 7.6e-243 843.6 442 89.1
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 9.9e-243 843.2 479 83.1
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.7e-242 842.4 479 82.9
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 2.2e-242 842.0 474 83.3
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.2e-242 842.0 479 82.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.2e-242 842.0 479 84.6
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 4.9e-242 840.9 476 83.8
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 4.9e-242 840.9 479 82.9
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.9e-242 840.9 479 83.3
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 6.4e-242 840.5 479 84.6
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 6.4e-242 840.5 479 84.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.1e-241 839.7 441 88.7
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.9e-241 839.0 480 82.5
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.9e-241 839.0 478 81.8
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 4.2e-241 837.8 479 82.3
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 4.2e-241 837.8 479 84.3
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 5.4e-241 837.4 481 82.7
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-240 835.9 491 82.3
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.1e-240 835.5 479 83.3
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.5e-240 834.7 487 81.1
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.0e-240 833.9 479 81.8
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 3.0e-239 831.6 461 85.7
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.9e-238 828.9 476 82.8
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.5e-238 828.6 478 83.3
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.3e-238 828.2 472 82.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 7.3e-238 827.0 476 82.1
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.6e-237 825.9 472 82.2
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 2.4e-236 822.0 477 82.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.9e-236 820.5 482 81.3
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 5.8e-235 817.4 460 83.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.7e-234 815.8 455 83.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 8.7e-231 803.5 504 78.8
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 9.0e-228 793.5 506 77.5
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-226 789.6 475 78.7
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-225 785.4 501 77.0
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 3.2e-225 785.0 475 79.2
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 7.6e-219 763.8 459 79.7
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-218 762.7 479 77.5
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-217 759.6 479 77.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 9.7e-214 746.9 480 75.8
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 3.4e-211 738.4 383 88.3
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.7e-210 736.1 499 73.3
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.9e-207 724.9 435 75.6
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 3.1e-204 715.3 450 73.3
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.0e-202 710.3 444 74.5
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.4e-201 706.4 482 72.8
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.6e-200 701.8 439 73.6
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.4e-188 663.3 465 71.8
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.3e-183 646.0 366 80.6
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.8e-181 639.0 367 80.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.0e-178 630.6 461 68.5
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.2e-171 607.1 480 65.2
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.3e-153 545.4 419 67.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.9e-148 530.0 304 80.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.8e-143 513.5 281 86.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 7.6e-142 508.1 304 78.3
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-141 507.3 275 86.5
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 9.2e-140 501.1 410 60.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.3e-138 496.5 464 52.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 3.4e-134 482.6 307 76.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.3e-125 454.1 308 71.1
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.6e-107 392.5 211 88.6
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.9e-107 391.7 256 73.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 4.2e-100 369.4 417 48.9
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.0e-98 364.8 228 75.4
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.0e-98 364.8 228 75.4
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.9e-93 346.7 464 44.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.8e-90 337.4 200 80.5
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.2e-78 298.1 428 42.8
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.2e-76 289.7 161 81.4
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 9.7e-73 278.5 180 72.2
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 6.3e-72 275.8 180 71.7
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 6.8e-66 255.8 172 70.9
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.4e-65 253.4 172 70.3
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 6.8e-50 202.6 99 87.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 6.8e-50 202.6 99 87.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 3.9e-45 186.8 111 79.3
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 2.7e-38 164.1 97 78.4
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 2.3e-37 161.0 105 71.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.6e-37 159.5 95 83.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.1e-34 150.6 85 82.4
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.2e-32 144.4 77 80.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 5.1e-29 133.3 77 77.9
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.3e-21 108.6 56 85.7
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 2.5e-20 104.4 135 39.3
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.1e-19 101.3 65 70.8
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 7.6e-17 92.8 76 57.9
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 5.4e-15 86.7 73 64.4
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.1e-15 86.3 72 63.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 7.1e-15 86.3 72 63.9
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 9.3e-15 85.9 45 84.4
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.3e-13 82.0 46 82.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.1e-10 72.4 34 91.2
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 1.2e-09 68.9 82 46.3
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 2.6e-09 67.8 56 57.1
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 2.6e-09 67.8 56 57.1
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 5.8e-09 66.6 58 55.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 7.6e-09 66.2 34 91.2
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 2.9e-08 64.3 49 59.2
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 2.9e-08 64.3 56 55.4
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 3.8e-08 63.9 86 41.9
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 1.1e-07 62.4 61 50.8
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.4e-07 61.2 64 56.2
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 5.4e-07 60.1 50 56.0
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 5.4e-07 60.1 50 56.0
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 5.4e-07 60.1 56 51.8
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 5.4e-07 60.1 56 51.8
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 7.1e-07 59.7 60 53.3
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 9.3e-07 59.3 56 53.6


User provided reference genes

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