Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 5.2e-62 241.1 145 100.0
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 3.4e-61 238.4 123 99.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.1e-56 223.4 123 91.9
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.3e-56 221.9 123 89.4
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 9.5e-56 220.3 123 91.9
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 9.5e-56 220.3 123 91.9
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 3.6e-55 218.4 123 89.4
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 4.7e-55 218.0 122 88.5
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.2e-55 217.6 123 88.6
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 8.1e-55 217.2 123 88.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-54 216.9 123 90.2
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.8e-54 216.1 123 90.2
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.8e-54 216.1 123 87.8
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.8e-54 216.1 123 90.2
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 2.4e-54 215.7 123 89.4
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 2.4e-54 215.7 123 88.6
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.4e-54 215.7 123 88.6
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 3.1e-54 215.3 123 88.6
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 3.1e-54 215.3 123 87.8
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 3.1e-54 215.3 123 87.0
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.0e-54 214.9 123 87.0
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 4.0e-54 214.9 122 86.9
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 88.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 88.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 88.6
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 87.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 87.0
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 5.2e-54 214.5 123 87.0
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 6.8e-54 214.2 123 88.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 6.8e-54 214.2 123 88.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 6.8e-54 214.2 123 88.6
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 6.8e-54 214.2 123 88.6
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 6.8e-54 214.2 123 86.2
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 8.9e-54 213.8 123 89.4
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.2e-53 213.4 131 85.5
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.2e-53 213.4 123 86.2
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.2e-53 213.4 123 86.2
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.5e-53 213.0 123 87.8
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.5e-53 213.0 123 85.4
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.5e-53 213.0 123 85.4
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.5e-53 213.0 123 85.4
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.6e-53 212.2 123 86.2
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.6e-53 212.2 123 86.2
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.6e-53 212.2 123 86.2
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.6e-53 212.2 123 84.6
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 3.4e-53 211.8 123 86.2
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.4e-53 211.8 123 86.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 3.4e-53 211.8 123 87.8
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 4.4e-53 211.5 123 87.8
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 4.4e-53 211.5 123 84.6
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 5.8e-53 211.1 123 87.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 7.6e-53 210.7 123 85.4
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 7.6e-53 210.7 123 85.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 7.6e-53 210.7 123 85.4
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 9.9e-53 210.3 123 85.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 9.9e-53 210.3 123 85.4
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-52 209.9 123 85.4
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-52 209.9 123 85.4
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.7e-52 209.5 123 87.0
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.2e-52 209.1 123 83.7
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 2.9e-52 208.8 123 84.6
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.8e-52 208.4 123 84.6
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 3.8e-52 208.4 123 84.6
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 4.9e-52 208.0 123 87.8
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 8.4e-52 207.2 123 85.4
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 8.4e-52 207.2 124 83.9
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.4e-51 206.5 123 82.1
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.4e-51 206.5 123 86.2
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.9e-51 206.1 123 82.9
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.9e-51 206.1 124 84.7
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.2e-51 205.3 147 76.2
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 4.1e-51 204.9 123 81.3
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 4.1e-51 204.9 122 82.8
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 5.4e-51 204.5 123 82.9
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.4e-51 204.5 123 83.7
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 9.2e-51 203.8 123 82.1
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.2e-50 203.4 123 79.7
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.1e-50 202.6 123 86.2
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.1e-50 202.6 149 73.2
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 2.7e-50 202.2 123 80.5
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 3.5e-50 201.8 123 82.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-49 199.9 123 82.1
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.3e-49 199.9 123 78.9
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.3e-49 199.9 123 78.9
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 2.3e-49 199.1 130 79.2
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 2.3e-49 199.1 123 80.5
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-48 196.8 111 91.0
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.1e-48 196.8 111 91.0
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.1e-48 196.8 115 86.1
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.1e-48 196.8 120 80.8
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 1.5e-48 196.4 115 86.1
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.9e-48 196.1 120 80.0
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.9e-48 196.1 120 80.8
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.5e-48 195.7 114 86.8
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-47 192.6 123 80.5
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-47 192.6 123 80.5
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.6e-47 191.8 123 80.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 4.7e-47 191.4 106 92.5
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 2.4e-46 189.1 123 77.2
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 3.1e-46 188.7 123 74.0
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 5.2e-46 188.0 123 74.8
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 2.6e-45 185.7 123 79.7
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 3.4e-45 185.3 123 72.4
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.4e-45 185.3 123 72.4
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 8.7e-41 170.6 113 79.6
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.3e-40 168.7 101 87.1
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.6e-40 167.9 96 88.5
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 5.6e-40 167.9 96 91.7
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.1e-39 166.0 96 87.5
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 2.8e-39 165.6 96 87.5
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 8.1e-39 164.1 96 89.6
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 8.1e-39 164.1 96 85.4
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 8.1e-39 164.1 96 85.4
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.0e-37 159.5 96 82.3
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.3e-36 156.8 129 65.1
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 2.2e-36 156.0 116 69.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 2.4e-35 152.5 96 80.2
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 5.4e-35 151.4 115 64.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.2e-34 150.2 126 69.8
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 2.1e-34 149.4 98 73.5
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.0e-33 147.1 97 76.3
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.5e-32 143.3 85 85.9
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 3.3e-32 142.1 84 86.9
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 5.6e-32 141.4 123 62.6
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 7.4e-32 141.0 84 88.1
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.6e-31 139.8 84 88.1
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 6.9e-30 134.4 84 83.3
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 4.9e-28 128.3 86 77.9
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 3.5e-26 122.1 171 45.0
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 8.7e-25 117.5 104 52.9
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 8.7e-25 117.5 119 55.5
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 2.1e-23 112.8 124 55.6
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.1e-23 112.8 114 50.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 6.9e-22 107.8 60 83.3
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.5e-21 106.7 64 81.2
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 7.6e-21 104.4 84 65.5
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 2.2e-20 102.8 65 76.9
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 4.9e-20 101.7 83 66.3
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.8e-17 93.2 112 42.0
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 2.5e-16 89.4 60 78.3
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.3e-15 87.0 62 72.6
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 1.1e-14 84.0 107 43.0
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.0e-13 79.7 39 94.9
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.0e-13 79.7 39 94.9
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.6e-13 79.3 39 92.3
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 7.7e-13 77.8 39 89.7
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 6.5e-12 74.7 39 84.6
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 5.5e-11 71.6 39 84.6
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.6e-10 68.9 63 57.1
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 9.7e-08 60.8 132 32.6
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.3e-07 60.5 68 51.5
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 4.8e-07 58.5 48 66.7
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 5.3e-06 55.1 41 65.9


User provided reference genes

Program Settings