Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.7e-243 845.5 412 100.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.1e-225 785.4 405 92.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.1e-225 785.4 405 92.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-211 739.2 405 87.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.6e-207 725.3 399 86.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.4e-197 693.0 407 80.1
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-195 686.4 409 79.5
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 6.2e-193 677.6 404 79.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.8e-192 676.0 409 79.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.7e-190 669.5 403 78.2
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.9e-190 667.9 398 78.6
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.5e-188 661.8 408 75.5
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.0e-187 658.7 404 76.5
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 6.2e-185 651.0 404 75.7
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-184 650.2 402 76.1
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-184 649.8 400 76.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.0e-184 648.3 404 75.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.2e-183 646.7 400 76.5
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-183 646.0 400 76.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.4e-183 645.2 401 77.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.6e-183 644.0 401 76.8
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.8e-182 641.7 400 76.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.9e-182 641.3 401 76.1
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 8.4e-182 640.6 401 76.1
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.1e-181 640.2 407 74.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.9e-181 639.4 407 74.4
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 4.2e-181 638.3 407 74.4
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 5.4e-181 637.9 407 74.2
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 5.4e-181 637.9 407 74.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.4e-181 637.9 401 75.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.9e-180 634.0 401 76.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.0e-179 632.1 409 72.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.9e-179 631.7 404 72.8
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.7e-179 630.9 413 72.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.7e-179 630.9 410 72.9
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-178 629.8 409 73.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.5e-178 629.8 401 74.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.3e-178 628.2 407 74.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.4e-178 627.5 407 72.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 3.7e-177 625.2 409 71.9
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.7e-177 625.2 401 74.1
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.1e-176 623.6 408 71.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.4e-176 623.2 411 73.5
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.0e-176 621.7 399 73.4
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.3e-176 621.3 401 74.6
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 2.6e-175 619.0 408 71.1
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.4e-175 618.6 404 72.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.0e-174 617.1 417 73.1
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.5e-174 614.4 398 71.6
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.4e-173 613.2 408 71.1
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.2e-173 611.7 399 72.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.0e-172 607.8 398 72.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.3e-171 605.9 408 70.8
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.5e-170 603.2 384 74.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 7.4e-170 600.9 402 69.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 9.6e-170 600.5 409 69.9
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 4.8e-169 598.2 405 70.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 6.2e-169 597.8 400 72.2
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.5e-167 591.7 406 70.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.7e-166 589.7 410 70.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 2.9e-166 589.0 403 69.0
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 8.4e-166 587.4 403 68.5
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.2e-165 585.5 407 69.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 5.5e-165 584.7 406 66.7
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.9e-164 580.9 423 67.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.0e-163 580.5 399 66.2
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 5.1e-163 578.2 406 67.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 5.1e-163 578.2 406 64.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.1e-162 577.0 406 66.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-162 577.0 390 68.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.1e-162 577.0 407 67.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.9e-162 576.2 393 67.7
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 9.7e-162 573.9 393 67.2
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 8.2e-161 570.9 408 65.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.4e-160 569.3 387 68.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 5.3e-160 568.2 405 67.9
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 6.9e-160 567.8 394 69.5
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.2e-159 567.0 412 64.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.5e-159 565.1 398 67.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.0e-158 563.9 391 68.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.0e-158 563.9 403 69.7
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.5e-158 561.2 387 69.3
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.8e-155 553.1 407 64.1
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 3.0e-155 552.4 407 63.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 5.1e-155 551.6 403 64.3
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.7e-154 547.4 401 65.6
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.3e-153 547.0 392 65.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.2e-153 546.2 383 66.1
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.3e-153 544.7 386 67.1
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.3e-153 544.7 386 67.1
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 8.2e-153 544.3 407 63.9
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 8.2e-153 544.3 394 65.0
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.1e-152 543.9 398 64.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.4e-152 542.7 414 61.4
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.5e-151 540.0 411 62.5
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 5.9e-151 538.1 387 64.9
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 7.7e-151 537.7 383 64.8
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.2e-150 536.2 405 64.0
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 6.5e-150 534.6 416 60.8
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.4e-149 533.5 403 63.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.2e-149 531.9 387 64.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 9.4e-149 530.8 405 60.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.6e-148 530.0 390 63.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.6e-148 528.9 405 60.7
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 4.7e-148 528.5 390 63.6
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.1e-148 528.1 402 60.9
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 3.0e-147 525.8 405 61.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 4.4e-146 521.9 383 64.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.2e-145 519.6 403 61.3
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.8e-145 519.2 388 62.1
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.1e-144 514.2 377 64.5
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.1e-144 514.2 377 64.5
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.5e-141 506.9 414 58.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 2.5e-141 506.1 391 62.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.7e-137 493.4 423 60.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.7e-137 493.4 387 59.7
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.4e-136 490.3 394 58.4
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.5e-130 470.3 392 58.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 5.7e-130 468.4 411 56.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.8e-126 455.7 388 55.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.9e-121 438.7 407 52.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.6e-119 433.7 400 53.8
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.0e-118 428.7 402 53.5
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.1e-116 421.8 406 51.0
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 6.1e-116 421.8 402 55.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.4e-113 411.8 399 53.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-106 390.2 375 52.5
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.4e-106 389.0 404 52.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 3.2e-104 382.9 402 47.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 6.0e-103 378.6 403 50.1
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.7e-102 377.1 408 48.3
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.7e-100 369.0 403 46.7
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 5.4e-96 355.5 404 47.3
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.1e-95 353.6 407 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 5.1e-94 349.0 398 46.0
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 6.4e-89 332.0 405 46.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-86 324.3 405 45.9
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.5e-85 320.9 258 60.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.7e-81 307.4 398 44.7
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.9e-80 303.9 407 45.2
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 9.3e-80 301.6 395 44.3
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.1e-76 288.5 228 62.7
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.2e-64 250.0 156 71.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-62 243.8 186 62.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.7e-57 227.6 421 34.4
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.6e-42 177.2 154 58.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-36 157.9 388 28.6
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 9.1e-35 152.1 114 62.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.2e-32 143.7 319 31.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 6.1e-31 139.4 123 61.0
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.2e-25 120.9 78 69.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 8.8e-22 109.0 412 27.9
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.4e-11 73.2 45 75.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 4.5e-10 70.1 47 66.0
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 7.2e-08 62.8 58 48.3
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 9.5e-08 62.4 399 25.8
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.4e-06 58.5 42 71.4


User provided reference genes

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