Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-199 699.9 433 100.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.5e-178 628.6 435 88.3
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.4e-171 605.9 441 85.0
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 5.6e-152 541.6 452 76.8
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 5.6e-152 541.6 448 80.4
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 5.8e-149 531.6 439 77.0
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.9e-147 526.6 442 75.6
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 3.2e-147 525.8 463 74.3
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 3.9e-145 518.8 435 76.1
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 5.1e-145 518.5 442 79.4
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 9.5e-144 514.2 444 74.3
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 6.2e-143 511.5 435 74.9
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 1.4e-142 510.4 438 76.0
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.2e-142 508.4 441 70.1
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 6.8e-142 508.1 432 75.7
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.5e-141 506.9 433 64.4
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 4.4e-141 505.4 415 78.6
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.7e-140 503.4 448 75.9
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 6.4e-140 501.5 442 74.0
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.4e-139 500.4 422 76.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.4e-139 500.4 439 75.2
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.4e-139 499.6 439 72.7
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.2e-139 498.8 419 77.1
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.6e-138 496.9 441 65.3
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.1e-138 496.5 434 79.0
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.1e-138 496.5 437 72.8
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 2.7e-138 496.1 442 75.3
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 4.6e-138 495.4 437 77.1
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.0e-137 494.2 435 73.6
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 3.0e-137 492.7 434 78.6
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 3.0e-137 492.7 531 64.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.9e-137 492.3 423 75.7
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 5.1e-137 491.9 437 63.2
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 5.1e-137 491.9 436 75.5
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 3.3e-136 489.2 442 73.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.3e-136 488.8 434 78.3
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.6e-136 488.4 423 75.2
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.6e-135 485.7 448 74.3
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.8e-135 485.3 423 75.2
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 8.1e-135 484.6 442 76.2
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 3.1e-134 482.6 444 76.4
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 3.1e-134 482.6 436 75.0
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.0e-133 479.9 440 71.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 2.4e-131 473.0 490 67.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.6e-130 470.3 448 72.5
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.6e-130 470.3 435 69.2
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.0e-129 467.6 460 68.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 8.7e-129 464.5 435 66.2
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.1e-128 464.2 473 71.2
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.1e-128 464.2 434 66.8
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 5.6e-128 461.8 437 70.9
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-127 459.5 419 71.6
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.1e-126 457.6 450 70.2
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.1e-126 457.6 406 77.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.4e-126 457.2 462 66.9
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 9.0e-126 454.5 437 73.2
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-125 453.8 432 73.1
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.5e-125 453.8 444 68.2
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.4e-125 452.6 436 72.7
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 3.4e-125 452.6 454 68.3
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 7.6e-125 451.4 437 71.6
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 9.9e-125 451.1 434 65.4
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.2e-124 449.9 268 82.8
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 3.8e-124 449.1 438 71.5
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.1e-123 447.6 444 69.6
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.9e-123 446.8 433 70.4
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.4e-123 446.4 500 62.2
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.2e-123 446.0 444 70.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.2e-123 445.7 243 86.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.2e-122 444.1 438 71.2
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-122 444.1 428 70.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 6.0e-122 441.8 430 72.6
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 3.9e-121 439.1 517 61.5
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 8.7e-121 438.0 426 56.1
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.6e-120 435.3 421 60.8
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.6e-119 433.7 436 64.7
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 4.8e-119 432.2 433 57.5
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 8.1e-119 431.4 235 86.4
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.8e-118 430.3 436 69.5
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 3.1e-118 429.5 435 59.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 4.0e-118 429.1 438 70.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.2e-117 427.6 436 64.4
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.2e-117 427.6 436 67.0
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 1.5e-117 427.2 432 67.8
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.0e-117 426.8 262 81.3
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 3.4e-117 426.0 505 58.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.8e-117 425.2 440 66.6
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.7e-116 423.7 415 56.1
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 8.4e-116 421.4 510 59.0
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.9e-115 420.2 438 66.9
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.0e-113 414.5 436 62.8
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.0e-113 414.5 480 53.5
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.9e-113 412.5 263 75.7
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.8e-111 405.6 435 66.7
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.1e-110 402.9 249 77.1
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 2.0e-109 400.2 241 80.1
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.7e-108 397.1 435 65.1
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 2.2e-108 396.7 432 60.0
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.0e-105 387.9 228 77.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.0e-105 387.9 228 77.2
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.0e-105 387.9 228 79.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.3e-103 380.9 231 78.8
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.0e-101 373.6 228 77.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 3.4e-101 372.9 388 72.2
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.3e-97 360.1 387 65.6
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.0e-97 359.8 410 63.9
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 4.1e-86 322.8 341 68.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.2e-83 312.8 155 89.7
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.4e-80 302.8 209 70.3
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.6e-77 294.3 149 87.9
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 2.7e-74 283.5 343 71.7
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 4.7e-74 282.7 332 70.5
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.0e-73 281.6 318 75.5
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.4e-70 269.2 137 86.1
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.0e-69 267.3 342 68.7
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.3e-68 264.6 349 65.3
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.6e-66 257.7 264 53.0
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.0e-65 255.0 144 84.0
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 8.3e-63 245.4 156 75.6
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 2.0e-61 240.7 226 51.3
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 4.5e-61 239.6 337 57.9
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-59 235.0 175 68.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 6.1e-58 229.2 280 45.4
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.8e-57 225.7 321 53.0
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 8.6e-52 208.8 112 83.9
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 8.0e-50 202.2 102 92.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 7.5e-48 195.7 294 69.0
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 9.8e-48 195.3 195 56.9
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.7e-47 194.5 303 60.1
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.9e-47 193.0 96 89.6
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.5e-45 186.8 97 91.8
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.3e-44 184.9 303 58.1
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 2.5e-43 180.6 96 86.5
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.6e-42 176.8 129 65.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 8.9e-41 172.2 97 81.4
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.6e-37 161.4 84 85.7
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.1e-37 161.0 86 89.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.7e-36 157.9 83 84.3
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.3e-36 157.5 252 63.1
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.6e-34 150.2 257 63.4
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 8.1e-34 149.1 80 88.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 8.9e-33 145.6 80 85.0
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 3.4e-32 143.7 80 86.2
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 7.1e-30 136.0 293 58.0
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.5e-27 128.3 320 51.2
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.6e-27 126.3 84 76.2
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.1e-25 120.6 77 77.9
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 7.8e-21 105.9 74 64.9
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.7e-20 104.8 60 85.0
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.5e-19 100.9 263 41.1
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.5e-19 100.9 68 64.7
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 2.9e-15 87.4 61 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 7.1e-14 82.8 69 66.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.5e-13 80.5 70 57.1
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 8.7e-12 75.9 43 81.4


User provided reference genes

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