Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-245 852.0 434 100.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.7e-202 707.2 402 90.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.5e-200 702.2 434 80.6
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 7.0e-195 684.1 444 80.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 5.4e-187 657.9 435 77.2
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.7e-186 655.6 430 76.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-185 653.3 394 85.5
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.8e-185 651.7 435 76.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.8e-185 651.7 394 85.3
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 8.6e-185 650.6 435 76.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.5e-184 649.8 431 74.7
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-184 649.0 435 75.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.0e-182 643.7 433 74.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.8e-182 642.9 435 75.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 8.9e-182 640.6 437 76.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.6e-181 639.0 435 74.7
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.6e-181 639.0 433 74.1
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.4e-181 638.6 435 74.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 6.3e-180 634.4 437 75.1
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.4e-179 633.3 433 73.9
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-178 630.2 439 73.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.3e-177 626.7 432 72.7
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.0e-177 624.8 430 73.7
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 8.6e-177 624.0 438 73.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 8.6e-177 624.0 432 72.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.1e-176 623.6 436 74.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.1e-176 623.6 436 74.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.9e-176 622.9 432 72.0
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.5e-176 622.5 408 76.5
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-176 622.1 436 74.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 5.6e-176 621.3 435 72.2
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 9.5e-176 620.5 433 71.1
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.1e-175 619.4 432 71.8
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.8e-175 619.0 432 71.8
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.6e-175 618.6 432 71.8
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.6e-175 618.6 447 70.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.4e-174 616.7 432 71.8
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.4e-174 616.7 432 71.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.3e-174 615.9 433 71.8
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.0e-174 615.1 432 71.1
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.8e-174 614.4 432 71.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 8.9e-174 614.0 432 71.3
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.2e-173 613.6 432 72.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.5e-173 613.2 435 71.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 9.8e-173 610.5 463 67.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 8.3e-172 607.4 433 70.9
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.6e-170 601.7 437 70.7
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.3e-169 600.1 433 69.3
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.3e-169 599.4 429 71.1
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.5e-168 596.7 432 70.6
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.5e-168 596.7 432 70.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 5.6e-168 594.7 432 68.3
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.6e-167 593.2 428 68.0
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.1e-167 592.8 461 67.9
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.2e-167 591.3 435 68.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.0e-167 590.9 435 69.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.1e-166 589.0 443 67.5
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.5e-165 586.6 428 67.1
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.9e-164 581.6 390 74.6
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 9.2e-163 577.4 451 65.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.6e-162 576.6 452 64.4
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.9e-160 569.7 390 73.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.3e-160 568.9 430 66.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 9.5e-160 567.4 446 64.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.6e-159 566.6 433 67.7
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.1e-159 566.2 430 67.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.8e-159 565.8 435 65.3
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 6.2e-159 564.7 399 70.2
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 8.1e-159 564.3 435 65.3
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.8e-158 563.1 433 65.8
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.8e-158 561.2 433 69.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 5.8e-157 558.1 454 62.6
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 5.8e-157 558.1 435 64.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.9e-156 555.1 436 63.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 5.4e-155 551.6 357 79.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.2e-154 550.4 429 66.7
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.7e-154 549.3 431 64.5
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 7.8e-154 547.7 435 63.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.3e-153 547.0 449 62.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.7e-153 546.6 439 64.7
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.9e-153 545.4 451 61.6
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 8.6e-153 544.3 455 61.3
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-152 543.9 456 61.2
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.3e-152 542.0 434 62.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.1e-151 539.7 416 67.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 6.8e-150 534.6 434 62.2
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.2e-149 533.9 438 63.2
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.5e-149 533.5 455 60.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 4.9e-148 528.5 383 68.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 4.9e-148 528.5 455 60.4
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.2e-147 524.2 433 63.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.1e-146 523.1 381 66.4
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.7e-146 522.7 376 71.5
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.6e-146 521.9 382 69.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.0e-145 520.8 319 82.1
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.3e-143 513.8 433 62.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.6e-143 512.3 437 60.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 4.8e-143 511.9 433 62.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.8e-142 510.0 392 66.3
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.4e-142 509.6 344 76.2
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.0e-142 508.8 349 72.5
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.9e-139 500.0 437 59.3
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.1e-138 496.5 432 61.8
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.3e-137 493.0 307 77.9
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.0e-134 482.3 434 62.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.2e-133 480.7 432 57.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 2.0e-133 479.9 424 58.3
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.8e-132 475.7 464 57.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-131 474.2 419 58.5
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 4.6e-130 468.8 300 77.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.8e-127 458.8 431 56.4
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.1e-126 457.6 415 57.3
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.3e-126 455.3 431 55.7
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.0e-125 453.4 331 69.2
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.5e-123 445.3 435 55.9
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.0e-121 439.5 384 59.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.6e-120 434.5 352 63.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 7.6e-117 424.9 440 54.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.0e-113 412.9 434 53.5
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 9.7e-104 381.3 322 61.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-98 364.0 439 50.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.7e-95 352.8 277 64.3
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-94 351.3 278 61.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.0e-93 347.1 278 62.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.6e-93 346.7 351 52.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.2e-92 343.6 278 61.9
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.1e-91 341.3 278 61.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 4.8e-87 325.9 230 67.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.3e-86 322.4 278 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.9e-83 313.9 328 49.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.1e-82 310.5 291 54.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.1e-74 283.9 157 92.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.0e-73 279.6 199 66.3
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.4e-72 276.6 365 43.6
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.8e-72 275.0 177 79.7
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.3e-71 274.6 157 88.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.7e-71 274.2 156 88.5
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.4e-70 270.4 155 88.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 9.1e-70 268.5 163 74.8
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.5e-67 261.2 156 84.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.6e-66 256.5 145 89.0
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 5.9e-61 239.2 270 49.3
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-59 235.0 184 67.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.0e-57 228.4 141 80.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.4e-57 228.0 133 88.0
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.8e-57 227.6 509 37.1
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.6e-53 213.0 182 62.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 3.0e-52 210.3 154 66.2
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-51 208.4 230 47.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.5e-51 208.0 132 84.8
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.5e-51 208.0 122 84.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 3.0e-44 183.7 99 94.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 8.6e-44 182.2 178 59.6
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.6e-42 176.8 481 30.8
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.4e-41 174.9 106 83.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-39 167.9 305 37.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.9e-35 154.5 129 60.5
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 7.8e-29 132.5 146 52.1
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 4.8e-26 123.2 116 55.2
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 9.0e-25 119.0 68 89.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.5e-24 118.2 215 38.1
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.2e-21 108.6 58 96.6
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.8e-18 97.4 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.7e-15 88.2 258 30.6
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-14 85.1 98 50.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.3e-12 78.6 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.4e-08 63.9 72 47.2
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 3.8e-07 60.5 50 56.0


User provided reference genes

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