Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 0.0e+00 1850.9 965 100.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 0.0e+00 1491.5 964 82.5
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 0.0e+00 1325.8 979 74.9
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 0.0e+00 1305.0 1030 70.6
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1118.2 957 64.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1085.5 954 64.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.1e-292 1007.7 940 61.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.0e-291 1005.0 948 59.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.1e-288 996.9 948 60.2
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.4e-288 996.5 1005 58.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.4e-280 969.9 938 60.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 9.2e-280 967.2 950 58.8
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-278 963.0 942 58.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 6.6e-278 961.1 949 58.7
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.5e-277 959.1 941 58.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.1e-276 956.1 941 58.6
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.2e-276 954.5 945 58.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.2e-274 950.3 910 59.6
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.4e-274 948.3 951 56.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 9.8e-274 947.2 948 57.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.2e-273 946.0 946 57.2
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.6e-269 931.4 948 57.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.5e-269 930.6 947 56.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.1e-268 927.5 947 56.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-267 924.5 947 56.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 6.0e-263 911.4 929 55.9
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 4.3e-261 905.2 945 56.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.8e-260 902.5 947 56.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 4.7e-260 901.7 947 56.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.7e-260 901.7 928 56.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.1e-260 901.0 952 54.3
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-257 893.3 954 54.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.1e-256 887.9 952 54.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.2e-255 887.1 945 55.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.6e-255 886.7 927 55.9
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.1e-254 881.7 971 53.9
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-253 880.2 927 55.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.3e-245 852.4 955 54.0
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.4e-241 838.2 936 52.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.4e-240 836.3 934 54.1
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 5.4e-240 835.1 954 52.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.7e-239 832.8 952 53.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.1e-237 827.4 949 52.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.6e-237 825.1 901 52.4
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.6e-236 823.5 926 52.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.7e-236 822.4 931 53.6
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.8e-236 822.0 981 52.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.5e-234 815.5 959 52.5
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 9.9e-234 814.3 953 51.8
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-233 812.8 906 51.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.2e-232 809.3 906 50.9
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.5e-232 808.5 930 52.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.0e-230 802.7 916 52.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-229 799.7 932 53.1
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.9e-227 791.6 950 51.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.8e-226 788.5 962 51.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-225 786.9 677 64.0
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.7e-225 786.9 939 51.4
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-224 783.9 907 52.4
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.2e-224 782.7 952 50.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 7.1e-224 781.6 912 53.1
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 4.3e-221 772.3 878 53.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-220 770.0 785 57.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.2e-220 770.0 877 51.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.8e-220 768.8 907 51.6
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.4e-219 766.5 919 50.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 9.0e-219 764.6 910 51.0
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.8e-217 759.2 878 52.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.5e-216 755.4 894 50.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.2e-216 755.0 935 51.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.1e-215 751.9 924 50.5
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-212 743.8 822 52.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.4e-211 740.7 934 49.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-210 736.5 942 48.9
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.0e-209 734.6 910 49.3
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-209 734.2 822 52.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.2e-208 729.2 867 50.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 9.4e-208 728.0 1030 46.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.6e-207 727.2 941 49.0
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.6e-207 726.1 876 51.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-206 724.5 864 49.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.8e-206 723.8 908 49.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-206 723.0 964 48.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.7e-204 717.2 901 49.1
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.8e-203 713.8 910 49.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.5e-202 710.7 969 47.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.5e-202 709.5 943 48.4
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.5e-201 704.9 873 49.8
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.1e-200 704.5 921 47.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-199 700.7 935 47.3
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.7e-199 699.1 968 47.8
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-197 693.7 918 48.5
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.7e-196 689.5 931 48.2
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.6e-194 683.3 901 47.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.3e-187 659.1 618 61.3
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 7.7e-186 655.2 935 46.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.2e-184 649.4 680 55.3
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 9.4e-184 648.3 921 46.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.8e-182 642.1 882 47.2
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.7e-180 636.3 883 46.4
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.8e-180 636.0 906 45.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.3e-180 635.6 917 45.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.1e-179 632.9 861 46.9
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.6e-178 630.9 866 47.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.0e-178 630.6 940 44.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.9e-177 626.7 898 44.9
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.9e-177 626.7 864 46.3
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.2e-176 622.9 919 46.2
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-172 610.9 907 44.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.8e-172 610.1 862 45.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.0e-171 605.5 861 44.3
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-170 604.4 929 46.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.0e-169 601.7 921 44.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 9.2e-163 578.6 858 46.7
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.1e-159 567.4 980 42.1
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.8e-158 562.4 698 48.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-155 555.1 940 41.7
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-155 555.1 940 41.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.4e-155 554.7 905 42.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.9e-155 554.3 904 42.1
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-154 551.2 940 41.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.6e-154 551.2 912 42.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.7e-154 550.4 944 41.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.6e-154 549.7 905 42.4
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.0e-153 548.5 912 42.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.7e-153 547.7 958 41.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.1e-153 546.2 940 41.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 8.6e-153 545.4 697 50.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.5e-152 543.9 877 43.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.3e-152 543.5 861 44.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.6e-151 540.0 710 48.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.9e-149 531.9 901 41.5
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.3e-148 528.9 498 59.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.9e-144 517.7 835 41.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.0e-142 510.0 628 50.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.8e-141 506.1 915 40.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.9e-140 503.1 889 40.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-133 481.5 473 60.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-125 454.9 926 37.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.7e-124 451.4 824 39.3
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.8e-121 441.4 866 38.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.6e-120 436.4 440 57.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.6e-117 426.0 905 35.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 5.8e-109 399.8 624 44.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.9e-108 397.5 860 37.0
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.5e-101 375.2 576 43.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.0e-100 372.5 936 35.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-89 335.1 338 55.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.1e-82 310.1 282 58.2
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 5.2e-81 307.0 926 31.6
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.6e-80 304.7 358 52.8
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.2e-76 291.6 768 32.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.9e-76 291.2 397 46.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-75 288.9 777 33.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-68 264.6 790 31.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 7.5e-64 250.0 982 27.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.8e-63 248.1 353 47.0
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.0e-60 239.6 283 52.7
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.9e-60 238.0 423 41.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.0e-60 237.3 764 31.4
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-59 235.3 229 56.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.5e-59 235.0 288 49.7
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.4e-49 202.6 636 28.3
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.8e-42 178.3 262 46.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.7e-39 169.1 180 54.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-39 168.3 567 29.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 8.3e-39 166.8 127 64.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.6e-36 156.8 266 44.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.1e-27 129.8 132 51.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-26 125.9 106 63.2
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-25 122.9 154 49.4
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.9e-20 104.8 119 57.1
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.4e-17 95.5 88 52.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.0e-16 92.4 98 60.2
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 9.9e-16 90.1 121 47.1
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-15 89.7 139 41.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.9e-15 88.6 117 45.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.8e-15 88.2 129 47.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-12 79.7 154 36.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-11 76.6 42 78.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 4.0e-09 68.2 66 43.9
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 4.5e-08 64.7 101 44.6


User provided reference genes

Program Settings