Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 8.1e-277 956.4 485 100.0
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 4.4e-238 827.8 488 87.7
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 3.1e-183 645.6 489 70.6
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 6.9e-183 644.4 487 68.0
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.4e-175 620.2 487 66.5
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 5.3e-175 618.2 486 67.1
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.2e-174 617.1 486 66.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 4.5e-174 615.1 486 68.1
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.3e-170 603.6 474 68.4
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 4.3e-169 598.6 484 65.1
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 6.2e-168 594.7 490 65.5
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.4e-166 589.0 486 63.8
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.4e-166 589.0 485 63.1
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 7.6e-166 587.8 488 63.3
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.3e-165 587.0 487 65.7
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.2e-165 586.3 489 65.0
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.8e-165 585.5 485 62.7
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.2e-164 582.0 484 63.8
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 9.3e-164 580.9 483 65.6
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 6.0e-163 578.2 481 64.0
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.9e-162 575.5 483 65.0
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 4.3e-161 572.0 487 63.2
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.9e-157 559.3 486 62.1
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.5e-153 547.0 482 61.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.7e-153 545.0 486 59.7
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.8e-152 542.0 486 59.9
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 6.3e-152 541.6 486 59.7
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.5e-150 537.0 487 59.5
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.0e-149 534.3 485 60.6
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 8.7e-146 521.2 493 58.6
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 8.7e-146 521.2 484 60.7
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.7e-144 516.9 484 57.6
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-143 513.8 485 58.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.5e-142 510.4 501 56.5
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.5e-142 510.4 501 56.5
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.3e-141 507.3 486 59.3
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 7.2e-140 501.5 490 56.1
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.2e-139 500.7 493 57.4
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 3.0e-138 496.1 496 56.7
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.1e-137 494.2 484 54.3
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.6e-137 493.0 487 57.5
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 5.7e-137 491.9 494 57.1
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 6.9e-135 485.0 484 54.3
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 1.7e-133 480.3 488 55.5
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.9e-132 476.9 485 56.7
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 4.7e-131 472.2 488 54.9
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 5.2e-130 468.8 483 54.2
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.5e-129 467.2 492 53.9
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.3e-128 464.2 484 54.3
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.4e-127 460.7 368 66.3
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 3.1e-127 459.5 486 53.1
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 4.1e-127 459.1 489 52.6
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 5.3e-127 458.8 488 52.7
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.7e-126 454.9 477 54.9
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.7e-125 453.8 491 51.9
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-125 453.0 451 55.7
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 2.5e-124 449.9 459 55.8
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.8e-122 443.7 494 51.2
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 2.6e-121 439.9 493 51.7
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.3e-120 437.6 494 51.8
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.2e-120 436.8 494 51.0
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.1e-119 434.5 490 50.2
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 4.1e-119 432.6 488 52.0
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.0e-118 430.3 494 48.8
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.3e-117 427.6 483 52.6
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.7e-117 427.2 489 49.7
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.5e-117 424.9 489 49.5
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.5e-116 423.3 486 50.4
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 4.2e-116 422.5 309 67.0
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.5e-116 422.2 493 48.7
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 1.4e-114 417.5 493 50.1
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.8e-114 417.2 487 49.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 6.8e-114 415.2 474 50.4
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.2e-113 414.5 498 49.8
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-113 413.7 488 50.0
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 9.8e-113 411.4 408 57.6
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.2e-112 410.2 489 49.1
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 3.7e-112 409.5 333 63.1
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 6.3e-112 408.7 501 47.5
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-111 407.9 502 47.8
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 3.1e-111 406.4 488 49.2
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 4.1e-111 406.0 494 49.4
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 4.1e-111 406.0 494 49.4
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 4.1e-111 406.0 491 48.9
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 5.4e-111 405.6 490 48.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-109 400.6 494 50.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.8e-109 399.4 334 62.6
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.5e-108 396.7 504 46.8
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.5e-108 394.8 484 48.1
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.2e-107 394.4 503 48.9
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.1e-107 393.7 333 62.5
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.5e-105 385.2 496 47.2
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.3e-104 382.1 487 47.4
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 2.7e-102 376.7 451 51.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.5e-102 375.9 500 45.6
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.7e-101 374.0 503 45.1
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.3e-101 373.6 490 46.9
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.9e-101 373.2 486 47.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-101 373.2 488 46.9
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-100 370.2 447 50.8
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 5.6e-100 369.0 510 44.7
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.4e-97 359.4 484 45.5
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.4e-96 355.5 484 45.9
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-94 351.3 486 45.3
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.6e-94 350.9 504 44.2
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.7e-93 347.4 485 44.3
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-93 346.7 487 44.4
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.0e-93 345.9 488 45.5
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.0e-93 345.9 488 45.5
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.2e-91 341.3 293 60.1
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.7e-91 339.3 489 45.2
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-88 330.9 341 53.1
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 2.2e-88 330.5 500 42.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-87 327.8 289 58.5
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.0e-87 325.5 476 46.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 3.5e-86 323.2 489 42.3
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.3e-85 320.5 299 53.8
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.6e-85 318.5 356 49.7
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-84 316.6 483 42.7
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.1e-79 298.9 298 53.7
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.0e-78 295.8 487 40.7
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 3.0e-77 293.5 277 53.8
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 4.3e-76 289.7 245 60.4
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 2.4e-74 283.9 420 44.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.7e-70 270.4 478 37.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.6e-70 269.6 255 57.6
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 8.1e-67 258.8 332 49.7
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-66 258.1 215 62.3
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.6e-62 243.0 241 53.9
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 1.5e-57 228.0 301 48.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.0e-53 213.8 422 37.0
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.8e-49 199.5 171 62.0
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.7e-48 198.0 176 60.2
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-48 197.2 191 54.5
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.9e-47 194.5 156 62.8
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.5e-47 193.0 235 44.3
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.0e-45 188.7 328 41.8
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.0e-45 188.7 150 62.7
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.6e-41 172.6 166 54.8
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-39 168.3 164 54.9
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.8e-37 161.4 152 50.0
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.3e-37 161.0 290 41.7
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 4.3e-36 156.8 219 50.2
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.0e-28 131.3 122 51.6
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-27 128.6 84 73.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.7e-24 118.2 104 55.8
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.0e-21 109.0 69 75.4
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.8e-19 100.1 79 60.8
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-18 98.6 117 45.3
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.0e-17 94.7 72 66.7
TPR.G29721 Trifolium pratense HOM05D001219 ORTHO05D001017 5.3e-10 70.1 381 22.3
Medtr8g076010 Medicago truncatula HOM05D001219 ORTHO05D001017 1.6e-09 68.6 467 26.1
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 3.5e-09 67.4 197 28.4
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.5e-09 67.0 86 44.2
Medtr4g019320 Medicago truncatula HOM05D001219 ORTHO05D001017 7.7e-09 66.2 270 24.4
vmacro12363 Vaccinium macrocarpon HOM05D001219 ORTHO05D001017 3.8e-08 63.9 254 21.3
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.5e-08 62.8 56 46.4
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.5e-07 62.0 300 25.3
Psat7g258720 Pisum sativum HOM05D001219 ORTHO05D001017 2.5e-07 61.2 339 23.6
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 3.2e-07 60.8 197 27.4
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 4.2e-07 60.5 274 23.4
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 5.5e-07 60.1 199 27.6
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 7.2e-07 59.7 255 27.1
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 9.4e-07 59.3 231 25.5
FAN05G1445 Fragaria x ananassa HOM05D001219 ORTHO05D001017 1.6e-06 58.5 243 27.6
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 3.6e-06 57.4 197 26.4


User provided reference genes

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