Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.9e-185 651.4 334 100.0
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.4e-163 578.9 324 90.7
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.2e-154 550.1 324 85.8
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.2e-154 550.1 324 84.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.1e-154 549.3 323 85.4
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.0e-153 545.4 324 84.6
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.1e-152 543.5 324 83.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.1e-152 543.5 324 84.9
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.5e-152 543.1 324 83.0
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.5e-152 542.3 324 84.3
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.5e-152 542.3 324 84.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 5.6e-152 541.2 324 83.0
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.1e-151 539.3 321 82.9
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-150 537.0 324 82.4
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.1e-150 535.4 313 85.6
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.0e-150 535.0 320 83.1
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.9e-150 534.3 324 82.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.9e-150 534.3 324 82.4
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.5e-149 533.1 324 81.2
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-149 532.7 324 82.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.4e-149 531.9 324 81.2
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.4e-149 531.9 321 81.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.5e-149 531.6 324 81.5
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.7e-148 529.6 324 81.5
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 2.9e-148 528.9 324 81.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.8e-148 528.5 318 81.8
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 8.4e-148 527.3 324 80.9
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.9e-147 526.2 324 81.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.9e-147 526.2 324 81.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 7.1e-147 524.2 324 80.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.6e-146 523.1 323 81.1
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.1e-146 522.7 324 82.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.6e-146 521.5 331 79.5
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.0e-146 521.2 324 79.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 6.0e-146 521.2 324 80.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.3e-145 520.0 325 80.6
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.3e-145 520.0 324 78.7
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.3e-145 519.2 324 78.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.0e-145 518.8 324 78.7
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 3.9e-145 518.5 324 78.1
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.9e-145 518.5 324 78.4
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 5.1e-145 518.1 324 79.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.1e-144 516.9 324 79.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.5e-144 516.5 324 79.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.9e-144 516.2 324 81.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.9e-144 516.2 324 78.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.3e-144 515.4 324 77.5
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 5.6e-144 514.6 324 80.2
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.6e-144 514.6 325 78.5
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 9.6e-144 513.8 324 77.8
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.3e-143 513.5 324 78.7
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.7e-143 511.9 324 77.8
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 6.2e-143 511.1 324 78.7
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 6.2e-143 511.1 324 78.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.4e-142 509.2 327 78.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.1e-142 508.8 324 77.5
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.0e-142 508.4 326 79.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.9e-142 507.7 324 78.4
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.0e-141 506.1 362 73.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 7.6e-141 504.2 324 76.5
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 8.4e-140 500.7 324 78.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 5.5e-139 498.0 324 75.6
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 9.3e-139 497.3 324 76.2
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 9.3e-139 497.3 324 78.1
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.2e-138 496.9 366 72.1
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.1e-138 496.1 324 76.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.9e-138 494.2 324 77.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-137 493.8 324 75.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.9e-137 491.9 325 77.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.5e-136 490.0 324 75.0
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.5e-136 490.0 325 75.7
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 5.7e-136 488.0 324 75.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.1e-135 486.1 325 73.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 2.1e-135 486.1 325 74.8
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.4e-134 483.4 321 76.3
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.1e-134 481.9 336 73.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 5.3e-134 481.5 324 77.2
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.0e-132 477.2 301 78.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 5.0e-132 474.9 326 73.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 4.2e-131 471.9 324 74.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 4.6e-130 468.4 324 75.6
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 5.1e-129 464.9 325 72.9
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 8.7e-129 464.2 323 71.8
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.1e-128 463.8 324 73.1
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 5.7e-128 461.5 316 74.7
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.8e-127 458.4 321 70.7
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.8e-126 456.4 325 72.0
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.4e-126 456.1 324 71.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 4.1e-126 455.3 321 70.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 5.3e-126 454.9 324 71.9
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 6.9e-126 454.5 325 71.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.5e-125 451.8 325 71.7
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.7e-124 449.9 325 70.8
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-124 449.5 325 70.8
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.2e-124 449.5 324 70.7
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.5e-124 448.0 324 69.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 8.5e-124 447.6 322 70.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 3.2e-123 445.7 325 70.5
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 5.5e-123 444.9 324 72.5
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 4.6e-122 441.8 324 69.4
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 4.6e-122 441.8 324 69.4
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 7.9e-122 441.0 325 70.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 7.9e-122 441.0 325 69.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 7.9e-122 441.0 319 69.3
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.0e-121 440.7 324 69.8
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.4e-121 440.3 321 68.2
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-121 439.9 325 69.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 5.1e-121 438.3 325 68.9
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 5.1e-121 438.3 324 68.2
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 8.8e-121 437.6 322 66.1
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.3e-120 435.6 325 68.9
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 7.4e-120 434.5 329 69.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 9.7e-120 434.1 324 68.2
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.2e-119 433.0 325 68.9
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.4e-118 430.3 324 70.1
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.8e-118 429.9 241 91.7
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 2.4e-118 429.5 282 77.0
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.5e-115 419.5 322 66.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.5e-115 419.5 331 67.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-113 414.1 325 66.2
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.5e-112 410.2 324 66.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.5e-107 392.9 239 83.7
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 7.2e-107 391.3 280 71.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.3e-104 382.5 337 61.4
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.4e-102 376.3 325 58.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.1e-99 367.5 325 57.2
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 6.1e-98 361.7 322 56.5
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-96 356.7 326 59.5
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-93 347.4 319 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 5.0e-92 342.0 349 52.1
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 5.0e-92 342.0 297 61.6
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 3.7e-87 325.9 327 52.6
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.6e-74 283.9 230 65.7
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 8.0e-74 281.6 183 74.3
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-72 276.9 214 67.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.3e-67 259.2 328 51.5
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 5.6e-67 258.8 326 47.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.9e-59 233.8 192 65.1
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 6.8e-57 225.3 331 39.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.4e-56 223.0 194 61.9
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.3e-55 221.1 298 42.3
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-50 203.8 194 57.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-49 201.4 303 43.9
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-49 199.9 308 43.2
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 6.9e-49 198.7 161 70.2
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 6.9e-49 198.7 161 70.2
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.0e-44 184.9 140 63.6
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.8e-33 147.5 313 31.9
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.2e-31 140.6 106 69.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.8e-26 123.6 78 74.4
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.8e-26 123.6 78 74.4
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.4e-25 121.3 80 67.5
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.0e-24 117.5 76 75.0
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 3.3e-19 100.1 329 24.0
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.7e-15 87.8 74 58.1
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.9e-12 76.6 121 46.3
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 8.7e-12 75.5 44 84.1
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 2.5e-11 73.9 115 44.3
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 1.8e-09 67.8 37 78.4
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.3e-09 66.2 53 60.4
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 5.9e-08 62.8 204 27.0
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 5.9e-08 62.8 204 27.0
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 7.7e-08 62.4 204 27.0
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 7.7e-08 62.4 204 27.0
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.0e-07 62.0 204 27.0
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.0e-07 62.0 204 27.0
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.0e-07 62.0 204 26.5
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.3e-07 61.6 204 27.0
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 2.2e-07 60.8 204 27.5
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 2.2e-07 60.8 204 27.5
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 2.2e-07 60.8 204 27.5
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.2e-07 60.8 49 65.3
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.9e-07 60.5 204 26.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-07 60.5 48 62.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-07 60.5 48 62.5
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.9e-07 60.5 204 26.5
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 26.3
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 26.3
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 26.3
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 26.3
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 26.3
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 5.0e-07 59.7 213 25.8
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 8.5e-07 58.9 204 26.5
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 9.4e-06 55.5 134 26.1


User provided reference genes

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