Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1656.3 867 100.0
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1510.0 867 90.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1369.0 878 80.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1327.4 882 77.6
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1321.6 874 79.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1319.3 906 76.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1305.0 878 76.9
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1304.3 870 77.5
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1304.3 874 77.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1304.3 879 76.2
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1303.9 869 78.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 869 77.6
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1299.6 870 77.1
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1299.3 866 77.8
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1298.9 869 77.3
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1298.9 866 77.7
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1295.8 935 72.9
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1295.0 880 76.6
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1288.1 866 76.4
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1282.7 873 76.4
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1281.5 897 75.3
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1278.1 871 77.0
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1275.4 869 75.8
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1274.2 870 75.6
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1273.5 871 75.4
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1271.1 864 76.3
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1268.1 885 74.9
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1266.9 869 75.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1263.1 875 74.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1263.1 939 70.9
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1261.9 875 75.3
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1260.7 891 74.2
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 914 72.5
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 866 74.9
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1258.4 901 74.3
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1253.4 901 73.7
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1253.0 875 75.0
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1250.7 907 72.9
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1250.7 901 72.8
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 911 73.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 877 76.3
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1248.0 867 74.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1242.3 871 74.2
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1240.3 891 73.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 871 73.6
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 851 74.9
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1234.9 920 70.5
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1234.6 901 71.8
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1234.6 872 74.4
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1234.2 891 72.5
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1229.9 871 71.1
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 906 71.1
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 894 74.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 903 72.3
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 888 72.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 861 73.1
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 918 70.6
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 903 71.4
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 850 74.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 895 72.2
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 914 71.3
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 871 72.9
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1218.4 870 74.6
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 880 71.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 872 72.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1211.4 929 70.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 929 70.2
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 879 73.7
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 929 70.1
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 897 72.1
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1206.0 914 70.7
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1205.3 920 70.4
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 898 70.9
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 925 69.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 881 71.9
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 874 71.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 893 70.5
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 883 71.1
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1195.3 889 71.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1193.3 874 71.7
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 0.0e+00 1192.9 959 71.4
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 903 70.4
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 905 70.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 909 69.5
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 932 68.2
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 873 74.8
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 947 67.3
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 885 71.1
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 830 74.6
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 893 69.9
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 919 69.2
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 847 70.6
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 965 65.6
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1163.3 831 73.5
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 825 73.5
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 899 70.9
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1155.6 861 71.2
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 862 70.1
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 899 70.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 916 66.6
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 902 69.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 869 69.0
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1144.8 961 65.3
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 1030 60.5
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1121.7 839 71.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 868 68.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1114.8 818 72.7
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 0.0e+00 1114.4 874 72.0
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1112.8 873 65.4
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 762 72.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1092.8 852 67.1
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.0e-311 1071.6 864 64.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.1e-299 1030.8 874 63.4
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 5.0e-293 1011.1 910 62.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.9e-286 987.6 721 70.3
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 6.5e-277 957.6 748 69.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 6.1e-275 951.0 730 67.8
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 8.8e-274 947.2 889 55.3
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.8e-272 942.2 709 70.5
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.3e-269 933.3 572 80.2
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.2e-265 920.2 917 54.9
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.5e-260 902.5 505 85.1
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.8e-258 896.3 863 56.0
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 6.6e-245 851.3 692 66.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 5.0e-192 675.6 644 58.4
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.4e-186 657.5 543 66.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.1e-178 629.4 451 69.0
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.2e-176 623.6 371 80.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 6.3e-171 605.5 352 83.2
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-170 604.0 341 82.7
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-166 590.9 360 78.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.0e-160 571.6 442 68.3
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.2e-159 565.5 537 61.6
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 4.7e-142 509.6 698 44.6
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.0e-141 508.4 848 38.8
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.2e-132 478.4 995 34.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 8.6e-128 462.2 305 75.1
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 8.4e-115 419.1 510 51.6
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 6.0e-113 412.9 297 70.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.7e-112 411.4 452 57.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 9.6e-103 379.0 991 30.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.2e-97 362.1 620 40.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-87 328.9 352 59.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.6e-76 291.2 165 84.2
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 3.2e-50 204.5 327 40.4
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.3e-48 198.4 144 79.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.4e-45 188.3 104 85.6
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.4e-40 172.6 107 79.4
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.4e-39 167.9 107 72.0
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.3e-32 145.2 87 77.0
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.0e-24 117.9 86 70.9
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 9.2e-21 106.7 77 68.8
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.5e-20 104.8 94 61.7
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.2e-17 96.3 117 54.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-16 92.0 86 55.8
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 8.9e-16 90.1 70 67.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.4e-14 84.0 102 48.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-13 81.3 45 82.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.0e-11 76.6 64 57.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.9e-11 74.7 53 75.5
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 7.3e-10 70.5 52 67.3
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.2e-09 69.7 58 60.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 8.9e-08 63.5 40 67.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.2e-06 58.9 47 63.8


User provided reference genes

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