Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 3.2e-194 681.8 398 100.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.5e-154 549.3 323 95.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 8.5e-131 471.1 422 73.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.7e-129 465.3 419 67.5
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.7e-127 457.6 414 67.1
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.2e-126 456.4 417 72.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.8e-126 456.1 410 70.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.8e-126 455.3 408 68.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 8.3e-126 454.5 425 66.1
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.4e-125 453.0 413 70.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.4e-125 453.0 416 71.2
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 5.3e-125 451.8 418 66.0
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.1e-125 451.1 400 68.5
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.2e-123 446.4 413 68.0
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.9e-122 443.4 413 69.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 9.4e-122 441.0 415 70.6
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.6e-121 439.1 421 68.4
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.7e-121 438.7 407 68.3
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.1e-121 438.3 401 66.6
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 6.1e-121 438.3 412 65.5
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.0e-120 437.6 416 69.7
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.0e-120 435.6 415 65.8
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 5.2e-120 435.3 414 64.7
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.2e-119 434.1 413 65.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.4e-119 432.2 415 65.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.3e-118 430.6 413 65.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 4.8e-118 428.7 336 73.2
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 4.8e-118 428.7 414 63.3
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-117 427.2 414 63.0
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.1e-117 426.0 432 65.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 5.4e-117 425.2 411 65.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.4e-117 425.2 401 65.1
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 7.0e-117 424.9 426 64.8
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 7.0e-117 424.9 411 65.0
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-116 424.1 409 64.1
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.2e-116 424.1 402 65.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.6e-116 423.7 410 68.0
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.6e-116 423.7 409 63.8
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-116 423.3 414 63.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 2.0e-116 423.3 413 65.4
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 3.5e-116 422.5 411 64.7
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 3.5e-116 422.5 409 65.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 5.9e-116 421.8 410 64.1
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.7e-116 421.4 353 70.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.0e-115 421.0 403 65.3
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.3e-115 420.6 411 64.2
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-115 420.2 410 67.6
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 3.8e-115 419.1 404 67.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.8e-115 419.1 411 67.6
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.6e-115 417.9 410 67.6
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 8.6e-115 417.9 414 63.8
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.9e-114 416.8 402 64.9
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.2e-113 414.1 435 61.8
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.2e-113 414.1 416 63.2
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.1e-113 413.3 402 64.2
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.1e-113 413.3 406 64.0
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.6e-113 412.5 407 62.9
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.7e-113 412.1 353 69.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.7e-113 412.1 402 62.9
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-112 411.0 396 67.9
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-112 410.6 402 63.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.3e-112 409.8 406 63.1
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.3e-112 409.8 353 68.8
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.5e-111 407.1 414 63.3
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 3.4e-111 406.0 407 61.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 4.4e-111 405.6 336 68.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.3e-110 404.1 404 61.9
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.7e-110 403.7 410 67.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.2e-110 403.3 404 67.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 6.3e-110 401.7 403 60.5
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 6.3e-110 401.7 406 63.5
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 6.3e-110 401.7 414 62.8
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.1e-109 401.0 404 66.8
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.4e-109 400.6 410 61.0
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.4e-109 400.6 428 65.2
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 4.1e-109 399.1 403 63.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 7.0e-109 398.3 426 65.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 7.0e-109 398.3 405 61.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 7.0e-109 398.3 410 61.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 9.2e-109 397.9 406 62.6
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.6e-108 397.1 413 62.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.5e-108 395.6 403 60.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 7.8e-108 394.8 439 63.1
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.0e-107 394.4 427 63.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.7e-107 393.7 432 65.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.5e-106 390.6 406 61.6
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-106 390.6 417 61.6
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.5e-106 389.8 408 64.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 9.5e-106 387.9 416 63.0
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.1e-105 386.7 401 60.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.8e-105 386.3 405 65.9
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.7e-105 385.6 423 62.6
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.7e-105 385.6 423 62.6
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-104 384.0 414 59.4
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.8e-104 383.6 407 60.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 5.2e-104 382.1 432 63.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.2e-103 380.9 434 63.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-103 380.6 413 58.6
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.8e-103 378.6 425 64.2
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.2e-102 376.7 436 62.8
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.7e-102 375.9 334 66.2
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-101 374.4 329 67.2
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.4e-101 373.2 406 59.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 3.2e-101 372.9 412 58.3
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 9.2e-101 371.3 413 60.5
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 2.7e-100 369.8 402 59.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.5e-100 369.4 402 59.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.7e-99 367.1 439 60.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.1e-98 364.4 433 58.4
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.9e-98 363.6 368 63.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 7.3e-98 361.7 350 64.0
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.5e-98 361.3 406 60.8
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.1e-97 360.1 404 54.7
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-97 359.8 413 58.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.7e-97 359.0 314 67.5
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.1e-96 357.8 435 59.1
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.2e-95 354.4 411 58.2
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.2e-93 346.3 411 57.2
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.1e-93 345.9 332 65.4
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 6.0e-92 342.0 414 58.0
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 6.8e-88 328.6 345 59.4
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.7e-81 305.8 338 58.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.8e-78 296.2 372 51.6
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.2e-77 293.1 338 54.4
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 7.1e-77 292.0 412 49.8
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.6e-74 281.6 357 50.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.6e-73 279.6 355 50.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 6.4e-70 268.9 350 52.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.0e-68 262.3 404 47.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.9e-64 248.8 242 64.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.5e-58 230.3 409 42.5
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.4e-58 228.8 279 53.8
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.6e-52 211.1 207 59.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 2.8e-49 200.3 271 53.1
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 2.8e-49 200.3 271 53.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 8.4e-46 188.7 417 42.9
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.6e-41 174.5 225 50.2
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.1e-40 171.8 270 38.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.4e-40 170.6 194 56.2
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 4.1e-40 169.9 342 39.2
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 5.9e-39 166.0 242 47.1
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.7e-39 165.6 170 54.1
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.7e-39 165.6 320 43.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.5e-37 159.5 341 39.9
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.7e-33 147.9 260 37.3
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.1e-32 145.2 188 49.5
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.1e-28 131.0 103 67.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 5.1e-27 126.3 151 60.9
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.7e-25 121.3 105 65.7
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-23 114.8 162 47.5
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.8e-22 110.2 249 32.5
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.0e-19 100.1 112 64.3
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.8e-10 68.9 219 25.6
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 5.4e-08 63.2 114 37.7


User provided reference genes

Program Settings