Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 2528.1 1282 100.0
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 2358.2 1297 92.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1828.5 1297 71.8
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1803.9 1290 71.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1785.0 1296 69.5
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1783.8 1294 70.9
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1772.7 1238 74.8
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1771.5 1294 69.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1763.8 1293 70.5
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1760.7 1286 69.5
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1754.2 1293 69.6
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1743.0 1302 68.7
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1734.5 1291 69.5
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1733.8 1291 68.3
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1725.3 1322 67.2
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1719.1 1317 68.3
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1718.4 1309 67.5
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1708.3 1306 67.6
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1706.0 1287 68.2
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1687.9 1291 67.8
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1682.9 1291 67.6
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1682.5 1380 62.4
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1678.3 1292 67.5
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1672.9 1270 68.2
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1668.3 1258 67.7
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1667.1 1413 62.3
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1659.0 1292 65.6
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1657.5 1292 65.6
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1655.6 1290 65.8
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1655.2 1289 65.8
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1654.4 1291 65.8
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1652.5 1292 65.5
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1649.8 1293 65.7
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1646.3 1294 66.5
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1645.2 1293 65.4
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1640.9 1292 65.5
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1640.9 1292 64.3
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1640.6 1352 63.2
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1635.2 1306 64.7
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1630.2 1290 64.8
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1625.9 1185 70.8
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1624.0 1292 64.7
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1623.2 1289 65.4
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1618.2 1287 65.0
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1617.4 1292 64.7
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1617.4 1292 64.6
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1588.5 1293 63.7
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1583.2 1313 64.1
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1575.5 1110 72.5
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1573.9 1313 62.8
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1571.2 1298 61.9
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1568.1 1287 63.6
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1560.8 1287 63.2
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1551.2 1295 63.2
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1531.2 1108 70.1
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1526.1 1308 61.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1525.8 1293 60.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1520.0 1290 62.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1516.9 1294 61.2
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1515.7 1290 61.3
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1511.1 1290 61.4
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1510.0 1290 61.6
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1505.7 1287 60.5
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1503.8 1290 60.3
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1497.3 1287 60.8
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1495.3 1292 61.1
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1288 60.9
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1493.8 1287 60.5
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1492.6 1288 60.5
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1490.7 1288 60.4
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1489.9 1361 57.9
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1489.6 1290 61.1
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1489.6 1301 61.6
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1489.2 1300 61.2
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1488.4 1310 59.5
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1486.1 1290 60.9
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1485.7 1106 67.7
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1481.1 1288 59.8
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1474.1 1288 59.0
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1307 59.8
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1455.3 1387 57.7
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1293 60.0
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1453.3 1089 68.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1444.9 1114 65.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1432.2 1115 66.5
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1428.7 1159 63.6
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1426.0 1283 59.2
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1419.4 1287 58.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1417.1 1154 64.4
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1409.4 1292 56.4
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1384.4 1265 57.5
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1379.0 1300 56.7
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1369.8 1285 57.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1350.9 1077 64.5
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1337.0 1325 54.2
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1332.8 1290 54.5
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1323.5 1204 59.0
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1304.3 1257 54.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1290.8 1289 51.7
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1269.6 1284 52.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1235.7 1303 52.0
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1176.8 1334 49.2
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.9e-280 969.9 917 55.8
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.8e-267 926.8 647 70.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.3e-267 925.2 849 58.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.3e-265 920.6 1347 39.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.7e-261 905.2 751 64.2
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 1.7e-260 903.7 1362 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.6e-255 887.1 1190 42.6
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 2.3e-209 733.8 918 44.9
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 4.4e-205 719.5 1284 35.7
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.2e-199 699.1 567 63.5
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.4e-166 591.7 655 49.6
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.8e-161 574.7 378 77.8
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 9.7e-152 542.3 505 60.6
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 3.1e-150 537.3 349 76.5
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.1e-147 528.9 461 61.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 5.5e-131 473.4 323 73.1
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 9.2e-102 376.3 222 78.8
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.4e-97 362.5 473 45.7
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.6e-96 358.2 428 47.4
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 3.9e-92 344.4 1078 26.4
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.8e-87 327.8 213 75.1
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 8.4e-87 326.6 208 75.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 3.5e-85 321.2 208 74.0
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.5e-75 288.5 290 53.8
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.0e-72 278.9 887 24.8
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.1e-68 264.2 163 75.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.9e-62 245.7 146 76.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.6e-59 233.4 189 57.1
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.6e-53 216.1 714 27.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 5.7e-51 207.6 984 22.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.3e-47 196.4 174 56.9
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.7e-47 196.1 212 47.2
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.1e-41 174.9 143 67.1
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-38 166.8 207 44.9
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.9e-36 158.3 111 66.7
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 3.9e-36 158.3 387 31.5
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.9e-36 158.3 122 57.4
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 6.7e-36 157.5 142 57.7
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 4.4e-35 154.8 119 64.7
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 5.7e-35 154.5 151 54.3
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.7e-35 153.7 116 76.7
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 4.5e-32 144.8 179 43.0
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.7e-31 142.9 109 67.0
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 4.2e-30 138.3 113 75.2
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.8e-25 122.9 207 37.2
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-23 116.7 93 64.5
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 1.3e-23 116.7 239 33.9
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.6e-21 109.8 84 64.3
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 6.7e-20 104.4 84 65.5
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.4e-17 95.9 67 67.2
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 2.7e-16 92.4 65 63.1
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.9e-15 89.0 203 35.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.9e-14 86.3 55 72.7
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 6.8e-12 77.8 100 47.0
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.7e-10 73.2 62 58.1
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 1.3e-07 63.5 58 60.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 8.6e-07 60.8 73 68.5
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 8.6e-07 60.8 45 66.7
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.1e-06 60.5 40 70.0
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 3.3e-06 58.9 81 58.0


User provided reference genes

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