Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.6e-89 332.0 169 100.0
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 9.7e-84 313.5 169 92.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.2e-83 312.4 167 91.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.8e-83 312.0 168 92.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.7e-83 311.6 169 90.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.7e-83 311.6 169 91.7
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.7e-83 311.6 169 91.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 8.2e-83 310.5 167 91.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-82 310.1 169 89.9
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.1e-82 310.1 169 89.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.1e-82 310.1 169 91.7
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.4e-82 309.7 169 91.7
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.8e-82 309.3 169 89.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 91.1
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.3e-82 307.8 169 89.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 6.9e-82 307.4 169 90.5
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.5e-81 306.2 169 89.9
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 90.5
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.4e-81 305.1 169 89.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.5e-81 304.7 169 88.8
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.5e-81 304.7 165 87.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.9e-81 304.3 169 89.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 5.9e-81 304.3 169 89.9
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 7.7e-81 303.9 167 86.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 7.7e-81 303.9 168 89.9
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 7.7e-81 303.9 167 88.6
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.3e-80 303.1 169 88.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.7e-80 302.8 169 87.6
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 89.3
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.9e-80 302.0 169 87.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.8e-80 301.6 167 89.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 85.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.4e-79 299.7 165 87.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-79 299.7 165 87.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-79 299.7 165 87.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-79 299.7 168 88.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-79 299.7 165 87.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-79 299.3 168 88.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-79 298.9 165 87.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 4.2e-79 298.1 186 82.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 87.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 87.0
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 86.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-78 296.2 165 85.5
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 85.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 87.0
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 86.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 7.9e-78 293.9 165 85.5
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 86.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 85.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.8e-77 292.7 169 86.4
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 87.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 84.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.9e-77 291.6 182 81.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 86.4
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 87.6
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 82.8
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.5e-76 289.7 226 70.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 82.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 82.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 85.2
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 82.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 85.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.3e-76 288.5 149 94.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 84.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 82.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.7e-76 287.7 207 72.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.4e-76 287.3 182 79.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 85.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.7e-76 287.0 182 79.1
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.7e-76 287.0 182 79.1
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-75 286.6 192 77.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 84.6
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.8e-75 284.6 169 82.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 83.4
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.1e-74 283.5 167 85.0
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 83.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 82.8
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.9e-74 280.8 149 91.3
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 82.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 82.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-73 279.6 149 90.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.7
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 7.7e-73 277.3 169 79.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-72 276.6 197 72.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.7e-72 276.2 149 87.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.7e-72 276.2 167 78.4
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-72 275.8 214 69.6
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 82.8
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 79.9
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.8e-72 275.0 165 81.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 78.1
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.0e-72 274.6 143 92.3
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 5.0e-72 274.6 167 79.6
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.5e-72 274.2 148 89.2
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 82.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 75.1
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.1e-70 269.2 169 80.5
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.7e-70 268.1 158 85.4
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.1e-70 267.7 147 87.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.8e-69 266.2 153 88.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.3e-69 265.8 166 80.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.0e-69 265.4 145 89.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.9e-69 265.0 158 84.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.1e-69 264.6 148 87.2
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 5.1e-69 264.6 153 85.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-67 258.1 176 75.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 6.3e-67 257.7 239 60.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.1e-66 256.9 167 74.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.4e-66 255.8 168 77.4
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 5.9e-65 251.1 149 82.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.9e-64 248.8 168 74.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-62 241.9 155 80.0
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.7e-62 241.5 149 79.9
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-61 239.6 160 76.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.8e-61 239.6 166 73.5
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.0e-61 238.8 126 88.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.9e-61 238.4 170 77.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.5e-60 236.5 124 89.5
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.3e-59 231.1 152 78.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.4e-58 229.9 124 96.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.1e-58 228.8 169 72.8
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.6e-57 226.5 123 83.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.7e-56 223.0 124 91.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 8.5e-56 220.7 168 70.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-55 218.4 165 69.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.2e-54 216.9 191 59.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-54 216.9 120 90.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-54 216.5 120 89.2
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-54 216.5 120 89.2
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.7e-54 215.7 132 82.6
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-54 215.3 120 88.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-53 213.8 122 87.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.0e-53 213.8 157 67.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 6.7e-53 211.1 130 85.4
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 8.8e-53 210.7 148 76.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.8e-51 204.9 141 75.2
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.7e-49 199.1 157 71.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.5e-47 193.4 136 69.1
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.7e-44 181.4 109 86.2
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-41 173.3 90 93.3
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.3e-40 169.5 90 84.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-37 160.6 93 91.4
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-34 150.6 83 94.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.0e-32 144.1 106 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.9e-29 131.0 94 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-28 128.6 99 65.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.8e-28 127.5 73 91.8
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.3e-27 124.4 82 75.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-26 122.9 103 64.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.9e-23 113.2 75 74.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.3e-23 111.3 78 67.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-22 109.4 74 73.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.9e-19 99.4 64 76.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.0e-18 94.7 65 75.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.0e-16 90.9 153 35.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 3.9e-16 89.0 130 39.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-15 85.9 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-15 85.9 49 89.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.2e-14 81.6 108 51.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.5e-12 77.0 165 35.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.8e-12 75.1 44 72.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.2e-10 67.8 38 73.7


User provided reference genes

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