Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 0.0e+00 1373.6 1324 100.0
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1168.3 1327 77.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1165.2 1327 77.6
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.9e-269 931.8 1328 76.3
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-246 855.9 1352 64.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-233 814.7 1326 62.4
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.9e-204 716.5 1383 56.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.2e-201 706.1 1326 57.6
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.1e-198 696.4 1329 55.8
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 2.1e-186 657.5 1382 55.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.4e-182 642.9 1330 53.5
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 3.9e-180 636.7 1380 45.9
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.1e-179 635.2 1382 53.5
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.1e-177 628.6 1385 54.3
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.8e-177 627.9 1383 50.7
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.4e-175 619.4 1115 49.3
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 4.2e-174 616.7 1382 54.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.3e-169 599.7 1384 54.4
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 9.0e-169 599.0 1335 55.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.9e-167 593.2 1331 54.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.7e-164 582.8 1383 54.7
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 1.1e-163 582.0 1195 45.5
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 6.9e-161 572.8 1299 51.7
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 7.6e-160 569.3 1363 53.7
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.1e-158 565.5 1387 46.4
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 5.5e-158 563.1 1378 53.4
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.3e-155 553.9 1332 50.9
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.9e-152 543.1 1341 48.8
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.3e-147 527.3 1378 52.0
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.7e-146 523.9 1329 47.1
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 5.9e-144 516.5 1523 45.3
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.8e-143 513.8 1391 52.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 9.4e-142 509.2 1467 44.4
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-141 508.8 1378 52.4
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 6.3e-138 496.5 1386 50.3
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 7.7e-136 489.6 1333 47.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.0e-135 486.9 1387 52.2
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.2e-133 482.3 1384 51.7
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.1e-133 481.5 1333 54.9
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.0e-132 477.6 1387 52.2
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 8.8e-132 476.1 1378 50.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 2.6e-131 474.6 1582 41.0
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.6e-131 474.6 1385 46.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 4.8e-130 470.3 1386 50.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.1e-129 467.2 1442 42.5
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.8e-127 460.7 1343 43.2
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.1e-126 459.1 1385 46.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.7e-125 454.5 1334 46.0
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.0e-124 450.7 1385 50.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 5.2e-124 450.3 1394 45.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-122 445.7 1391 49.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-122 445.7 1391 49.8
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 2.8e-122 444.5 1577 38.0
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.8e-121 441.8 1522 43.2
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.4e-121 440.3 1333 43.3
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.0e-119 436.0 1587 39.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.5e-118 432.2 1573 39.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.9e-118 431.8 1337 43.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.4e-116 425.6 1387 45.9
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.0e-116 424.1 1389 48.7
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 4.4e-115 420.6 784 63.6
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.7e-114 417.5 1384 50.9
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 9.2e-113 412.9 1654 36.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.1e-110 406.0 1309 42.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.3e-110 404.4 1410 42.4
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 8.9e-108 396.4 620 44.0
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.1e-105 389.4 1385 45.6
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.0e-104 385.2 1328 41.9
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 6.6e-103 380.2 698 39.5
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.1e-100 371.3 1470 28.2
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.8e-99 367.1 1396 49.9
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.4e-97 361.7 1626 38.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.1e-96 358.6 1364 47.1
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.6e-95 353.6 1340 46.6
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.5e-94 351.7 1601 38.5
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 6.2e-93 347.1 624 42.9
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 5.4e-89 334.0 1490 43.9
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 5.4e-89 334.0 1386 50.3
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-87 328.9 1351 41.5
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.9e-86 325.5 1351 41.5
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.3e-86 324.3 1351 40.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.8e-84 318.9 1273 35.2
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 9.9e-83 313.2 1565 38.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 9.6e-78 296.6 1335 45.5
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 8.1e-77 293.5 1409 44.6
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 8.4e-74 283.5 1330 36.9
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-72 279.3 496 43.1
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.3e-70 271.6 1329 42.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 3.6e-69 268.1 1339 39.4
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.6e-67 260.4 553 49.2
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 9.6e-62 243.4 1396 39.3
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.1e-60 240.0 758 40.5
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.3e-60 237.7 1389 29.4
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-52 213.4 334 44.0
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 6.5e-50 204.1 1343 39.3
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 6.0e-48 197.6 251 51.8
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 2.3e-47 195.7 905 47.2
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.1e-44 184.9 400 36.5
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 3.4e-43 181.8 249 48.2
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 7.7e-43 180.6 588 29.8
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.2e-42 179.1 594 30.3
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.0e-42 177.9 833 33.5
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.5e-41 175.6 452 54.4
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.6e-40 171.4 1311 29.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.4e-39 169.9 416 33.4
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.7e-39 167.5 417 36.2
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 8.8e-39 167.2 619 32.3
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.1e-36 160.2 512 31.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.4e-36 159.1 394 34.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.3e-36 157.9 192 55.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.4e-35 155.2 398 40.5
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.4e-35 155.2 398 40.5
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.9e-34 152.1 433 32.3
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 5.0e-34 151.4 411 40.1
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-33 150.2 398 39.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 7.2e-33 147.5 456 43.2
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.4e-33 147.1 614 32.2
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.1e-32 146.0 175 53.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 4.7e-32 144.8 249 45.4
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.4e-31 143.3 330 37.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.1e-31 141.4 356 33.7
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.3e-30 138.7 607 35.3
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.4e-30 137.5 342 38.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.8e-29 135.6 175 54.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.8e-29 135.6 141 56.7
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-28 133.3 182 54.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-28 133.3 182 54.9
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.1e-28 132.1 184 53.3
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.1e-28 132.1 1219 39.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 5.3e-28 131.3 275 59.6
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 5.9e-27 127.9 201 47.8
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 7.7e-27 127.5 402 35.1
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.7e-26 126.3 235 41.7
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.9e-26 125.6 613 32.8
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-25 123.6 602 25.6
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-25 122.9 173 53.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 4.7e-24 118.2 222 38.3
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 4.7e-24 118.2 226 38.1
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-23 115.9 604 24.0
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 5.7e-22 111.3 283 39.6
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.3e-21 110.2 104 61.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-21 109.8 173 48.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.6e-19 102.4 97 63.9
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.7e-19 100.9 323 37.8
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.0e-18 100.5 1292 24.3
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 4.2e-17 95.1 201 40.3
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.5e-17 94.7 267 37.8
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 1.2e-16 93.6 208 34.1
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.6e-16 92.0 249 34.5
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.0e-16 90.9 249 34.1
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 8.0e-16 90.9 89 60.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.3e-15 89.4 270 37.0
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.5e-14 86.7 553 23.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.4e-14 85.5 174 36.2
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.4e-14 85.5 174 36.2
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 4.8e-13 81.6 1196 29.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.8e-13 81.6 568 27.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 8.3e-13 80.9 309 36.9
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 2.7e-11 75.9 363 23.4
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 5.9e-11 74.7 254 28.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.3e-10 73.6 560 29.3
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.7e-10 73.2 152 48.0
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.2e-10 72.8 378 23.5
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 3.8e-10 72.0 109 46.8
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 6.5e-10 71.2 564 25.2
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 8.5e-10 70.9 315 38.4
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-09 70.5 564 26.8
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 2.5e-09 69.3 293 35.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 5.5e-09 68.2 51 72.5
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 8.0e-08 64.3 369 23.3
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-07 63.5 179 33.0
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 2.3e-07 62.8 169 29.6
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.2e-07 61.6 75 49.3
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 1.5e-06 60.1 167 29.3
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.6e-06 59.3 336 28.6
vmacro18116 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 2.6e-06 59.3 162 32.7
CDE02G3207 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 5.7e-06 58.2 181 29.8


User provided reference genes

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