Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 6.3e-32 140.2 73 100.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 1.5e-09 65.9 63 66.7
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.0e-09 65.5 62 67.7
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.4e-09 64.7 62 67.7
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 3.4e-09 64.7 62 67.7
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 9.8e-09 63.2 62 66.1
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 9.8e-09 63.2 62 66.1
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 9.8e-09 63.2 62 66.1
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.3e-08 62.8 62 64.5
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.7e-08 62.4 63 63.5
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 2.2e-08 62.0 62 64.5
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 64.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 62.9
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 62.9
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 64.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 2.9e-08 61.6 63 63.5
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 2.9e-08 61.6 63 63.5
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.9e-08 61.6 63 63.5
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 62.9
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 2.9e-08 61.6 62 62.9
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 3.7e-08 61.2 62 64.5
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 4.9e-08 60.8 62 61.3
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.4e-08 60.5 62 64.5
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.4e-08 60.5 62 64.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 6.4e-08 60.5 49 71.4
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 6.4e-08 60.5 62 61.3
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 6.4e-08 60.5 62 64.5
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 8.3e-08 60.1 62 62.9
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 8.3e-08 60.1 62 61.3
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 8.3e-08 60.1 62 61.3
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.1e-07 59.7 49 73.5
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.1e-07 59.7 62 62.9
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.1e-07 59.7 62 62.9
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.4e-07 59.3 62 61.3
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.4e-07 59.3 62 61.3
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.4e-07 59.3 62 62.9
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 61.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 61.3
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 62.9
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 62.9
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 62.9
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 62.9
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 61.3
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.9e-07 58.9 62 62.9
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 2.4e-07 58.5 62 61.3
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 2.4e-07 58.5 62 61.3
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 2.4e-07 58.5 62 61.3
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.4e-07 58.5 63 58.7
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 2.4e-07 58.5 61 60.7
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.2e-07 58.2 62 59.7
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 3.2e-07 58.2 62 59.7
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 4.1e-07 57.8 49 67.3
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 4.1e-07 57.8 62 59.7
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 4.1e-07 57.8 62 61.3
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 5.4e-07 57.4 49 67.3
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 7.0e-07 57.0 62 61.3
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 7.0e-07 57.0 61 62.3
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 7.0e-07 57.0 61 62.3
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 7.0e-07 57.0 61 62.3
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 9.2e-07 56.6 62 59.7
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 9.2e-07 56.6 61 59.0
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 9.2e-07 56.6 49 67.3
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 9.2e-07 56.6 62 59.7
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 9.2e-07 56.6 62 56.5
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.2e-06 56.2 49 69.4
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-06 56.2 49 69.4
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.2e-06 56.2 62 61.3
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.2e-06 56.2 62 61.3
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.2e-06 56.2 49 69.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.6e-06 55.8 62 61.3
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.6e-06 55.8 49 69.4
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.6e-06 55.8 49 69.4
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.6e-06 55.8 49 69.4
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.6e-06 55.8 62 61.3
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 2.0e-06 55.5 62 61.3
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.7e-06 55.1 49 67.3
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 2.7e-06 55.1 63 55.6
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 3.5e-06 54.7 49 69.4
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.5e-06 54.7 49 69.4
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 4.6e-06 54.3 49 67.3
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 4.6e-06 54.3 49 67.3
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 4.6e-06 54.3 43 76.7
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 6.0e-06 53.9 61 57.4
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 6.0e-06 53.9 61 57.4


User provided reference genes

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