Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.9e-263 911.4 476 100.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.9e-194 682.2 581 68.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-165 586.6 592 60.6
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 4.1e-71 273.1 544 41.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.8e-63 247.7 614 37.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.2e-60 236.9 599 36.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.0e-58 231.9 586 36.3
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.0e-58 231.9 596 36.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.7e-56 224.6 601 36.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.3e-53 214.9 632 33.9
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 8.3e-48 195.7 619 34.1
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.0e-42 178.7 640 31.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.4e-41 173.7 517 35.4
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.7e-40 170.2 555 35.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 3.7e-40 170.2 566 32.9
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.2e-38 165.2 508 33.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.0e-34 152.1 541 32.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 5.2e-34 149.8 563 31.6
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 7.5e-33 146.0 600 30.7
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.7e-32 144.8 516 31.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-31 142.1 641 31.4
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-31 140.2 634 31.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 7.8e-30 136.0 535 30.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.9e-29 133.7 624 31.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.9e-29 133.7 521 30.1
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.7e-27 126.7 455 31.2
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 8.9e-26 122.5 659 29.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.9e-26 122.5 635 28.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-25 122.1 638 28.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 5.8e-25 119.8 534 29.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 7.5e-25 119.4 568 28.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.9e-24 117.5 570 29.1
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.9e-24 117.5 370 31.4
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.9e-24 117.5 593 29.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.2e-22 112.1 508 30.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.2e-22 112.1 450 31.1
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.7e-22 110.9 504 30.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.7e-22 110.9 526 29.1
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 6.0e-22 109.8 256 36.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.8e-22 109.4 577 29.6
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.3e-21 108.6 372 30.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.3e-21 108.6 160 46.9
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.3e-21 107.8 317 32.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.3e-21 107.8 356 31.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 5.0e-21 106.7 232 41.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 6.6e-21 106.3 267 38.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 8.6e-21 105.9 383 30.5
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-20 105.1 372 30.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.3e-20 104.0 253 39.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.3e-20 103.6 553 30.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.3e-20 103.6 677 28.2
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.6e-20 103.2 521 29.2
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.6e-19 101.7 418 30.1
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.8e-19 100.9 536 30.4
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.2e-19 99.8 700 27.4
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 6.2e-19 99.8 234 41.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 6.2e-19 99.8 423 30.0
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.1e-18 99.0 251 39.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-18 98.2 322 32.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.3e-18 97.8 330 31.2
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 3.1e-18 97.4 589 27.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.2e-18 96.7 290 32.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 5.2e-18 96.7 348 30.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.8e-18 96.3 444 27.9
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 8.9e-18 95.9 601 27.6
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 8.9e-18 95.9 601 27.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-17 95.1 521 28.2
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.5e-17 95.1 240 37.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.0e-17 94.7 547 29.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-17 94.4 422 29.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.6e-17 94.4 520 30.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.4e-17 94.0 284 33.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 5.8e-17 93.2 458 29.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 7.5e-17 92.8 351 30.8
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 9.9e-17 92.4 599 27.5
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 9.9e-17 92.4 754 26.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.9e-16 90.9 233 39.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.7e-16 90.5 412 28.6
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 6.4e-16 89.7 476 29.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 8.3e-16 89.4 262 33.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.9e-15 88.2 482 27.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-15 88.2 184 41.3
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.9e-15 88.2 298 32.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.4e-15 87.8 425 30.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.2e-15 87.4 489 27.6
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.2e-15 87.4 651 28.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.4e-15 86.7 578 26.1
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.2e-15 85.9 267 31.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 9.2e-15 85.9 215 34.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 9.2e-15 85.9 274 31.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.1e-14 84.7 235 35.3
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.7e-14 84.3 687 26.2
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.6e-14 83.6 548 28.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.0e-14 83.2 128 46.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.8e-14 82.8 403 27.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.3e-13 82.0 583 29.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.9e-13 80.5 579 28.5
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.1e-13 80.1 164 39.6
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.1e-13 80.1 428 31.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.1e-13 80.1 629 25.4
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-12 79.0 561 26.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.1e-12 79.0 169 41.4
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 3.3e-12 77.4 570 27.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-12 77.4 244 34.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.3e-12 77.0 581 26.9
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 4.3e-12 77.0 610 26.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 7.3e-12 76.3 743 25.7
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-11 75.5 169 40.8
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.8e-11 74.3 156 37.8
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.2e-11 73.2 607 27.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.2e-11 73.2 192 38.5
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 8.1e-11 72.8 551 26.0
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.8e-10 71.6 670 26.0
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.8e-10 71.6 192 38.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.4e-10 71.2 441 26.5
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.4e-10 71.2 418 27.0
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.1e-10 70.9 85 50.6
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.2e-10 70.1 576 26.0
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 6.8e-10 69.7 87 49.4
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-09 68.6 308 30.5
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-09 68.6 566 24.9
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-09 68.6 124 43.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.0e-09 68.2 459 26.4
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.0e-09 68.2 121 38.8
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 2.0e-09 68.2 234 31.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.4e-09 67.4 559 25.4
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.4e-09 67.4 457 26.5
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.4e-09 67.4 105 44.8
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.4e-09 67.4 105 44.8
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 3.4e-09 67.4 480 28.3
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 3.4e-09 67.4 261 31.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 4.4e-09 67.0 426 26.8
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.4e-09 67.0 172 35.5
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 7.6e-09 66.2 105 43.8
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 7.6e-09 66.2 486 27.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-08 65.5 114 36.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-08 65.1 283 30.4
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 2.9e-08 64.3 114 40.4
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-08 63.9 295 29.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.8e-08 63.9 271 30.3
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.8e-08 63.9 351 27.4
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.4e-08 63.2 125 37.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.1e-07 62.4 365 26.8
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.4e-07 62.0 144 34.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.4e-07 61.2 125 37.6
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 3.2e-07 60.8 89 44.9
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 5.4e-07 60.1 135 33.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 5.4e-07 60.1 157 35.7
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 7.1e-07 59.7 254 26.4
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.2e-07 59.3 289 30.8
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.2e-06 58.9 108 36.1
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.6e-06 58.5 187 34.2
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 1.6e-06 58.5 127 36.2
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.1e-06 58.2 246 27.2
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.1e-06 58.2 209 30.1
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.1e-06 58.2 172 34.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.7e-06 57.8 282 27.7
Zm00001eb044080 Zea mays HOM05D036983 ORTHO05D037006 2.7e-06 57.8 115 37.4
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 3.5e-06 57.4 232 33.6
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.6e-06 57.0 276 25.0
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 7.8e-06 56.2 107 42.1
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 7.8e-06 56.2 215 32.6


User provided reference genes

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