Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 2652.1 1393 100.0
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 2107.4 1393 78.6
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1923.3 1395 71.9
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1881.7 1408 69.6
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1871.7 1418 69.7
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1869.7 1456 70.3
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1844.3 1454 70.8
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1837.0 1414 69.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1832.0 1425 69.5
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1828.1 1394 69.5
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1816.2 1410 70.0
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1798.5 1406 69.2
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1797.3 1412 67.3
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1797.3 1402 69.6
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1787.3 1406 69.1
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1784.2 1481 67.3
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1783.1 1378 69.2
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1765.0 1459 66.0
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1765.0 1459 66.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1764.6 1407 68.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1750.7 1411 67.1
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1749.2 1432 65.9
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1740.7 1425 65.7
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1739.2 1480 65.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1736.1 1432 65.6
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1734.9 1479 64.8
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1734.2 1480 65.7
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1732.2 1413 65.7
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1729.5 1478 64.7
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1728.0 1401 64.8
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1723.4 1541 63.6
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1716.0 1409 65.1
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1710.7 1355 68.0
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1693.7 1422 65.6
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1692.6 1480 64.8
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1692.2 1418 64.0
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1683.7 1418 64.4
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1671.0 1406 64.4
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1668.7 1370 64.2
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1667.9 1416 63.2
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1654.8 1442 62.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1640.9 1440 60.4
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1609.7 1407 64.5
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1607.4 1441 59.5
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1605.1 1530 57.2
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1586.2 1432 59.3
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1582.0 1406 63.3
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1578.5 1392 62.6
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1572.0 1421 60.5
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1560.4 1460 59.9
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1559.3 1374 61.8
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1558.5 1318 61.8
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1550.4 1574 56.6
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1542.3 1448 59.4
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1540.4 1429 58.6
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1540.4 1426 58.1
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1539.2 1239 67.2
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1538.5 1429 58.6
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1536.2 1423 60.4
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1532.3 1423 57.8
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1528.8 1424 57.7
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1527.7 1268 68.9
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1523.1 1442 56.9
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1518.8 1311 60.3
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1514.2 1394 57.6
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1511.9 1524 56.7
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1509.6 1222 64.6
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1498.8 1426 57.2
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1498.0 1478 56.4
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1496.5 1425 57.0
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1494.2 1440 56.8
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1493.0 1427 57.2
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1490.7 1302 59.9
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1488.4 1219 67.4
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1488.0 1434 55.8
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1486.1 1046 70.4
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1472.2 1366 59.1
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1454.5 1246 60.9
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 0.0e+00 1449.9 855 84.9
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1414.8 1551 53.1
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1405.6 1195 64.1
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1402.5 1245 65.9
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1374.4 1299 56.7
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1367.1 1300 56.7
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1364.0 1237 57.1
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1357.8 1109 66.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1336.2 1404 54.3
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1316.6 1355 52.3
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1272.3 1465 49.4
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1224.2 1460 49.3
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1212.2 873 69.0
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1196.8 765 76.5
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1162.9 765 75.0
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1137.1 853 65.4
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 2.0e-299 1033.1 1025 51.9
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.3e-292 1009.6 1037 51.0
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 2.4e-289 999.6 887 66.0
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.7e-282 975.7 1026 49.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.0e-280 969.9 938 64.1
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 6.0e-248 862.1 1001 48.6
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.6e-243 845.1 787 61.4
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 2.7e-224 783.5 480 77.9
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 5.7e-222 775.8 756 63.9
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 3.7e-221 773.1 756 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 3.0e-215 753.4 812 50.1
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.9e-194 683.7 483 71.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.2e-182 645.2 809 45.5
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 3.9e-154 550.4 503 55.1
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 1.5e-150 538.5 368 71.2
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 3.0e-146 524.2 324 76.2
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 4.3e-145 520.4 539 61.0
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 5.1e-114 417.2 323 62.5
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.6e-110 404.8 291 68.4
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 6.7e-106 390.2 236 78.8
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 9.4e-100 369.8 650 47.8
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.5e-94 352.4 678 45.0
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 4.2e-92 344.4 206 81.1
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.6e-91 342.4 224 74.1
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 7.0e-79 300.4 208 72.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.4e-73 281.2 172 77.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.8e-73 280.0 449 48.8
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 7.5e-65 253.8 757 26.4
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.6e-59 236.1 659 28.1
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 9.8e-57 226.9 171 69.0
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.7e-56 224.9 151 74.8
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 1.8e-55 222.6 144 71.5
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.8e-55 222.6 874 24.3
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 6.6e-53 214.2 603 32.0
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.9e-48 198.7 139 68.3
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.9e-45 188.3 139 70.5
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 4.7e-43 181.4 104 83.7
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 6.8e-42 177.6 115 73.9
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 7.5e-41 174.1 160 55.6
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 6.4e-40 171.0 231 45.5
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 4.1e-39 168.3 156 55.1
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 1.2e-38 166.8 153 58.8
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 5.2e-34 151.4 164 59.8
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.6e-30 139.8 112 61.6
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.6e-30 138.3 331 33.5
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 7.8e-30 137.5 122 63.1
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 7.8e-30 137.5 76 78.9
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-28 133.7 110 64.5
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 2.1e-27 129.4 679 22.8
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 2.8e-27 129.0 103 60.2
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.8e-26 126.3 153 50.3
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 6.8e-26 124.4 85 65.9
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.2e-24 119.4 156 47.4
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 2.2e-24 119.4 137 50.4
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.3e-21 110.2 148 43.2
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 3.0e-21 109.0 80 60.0
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 6.6e-21 107.8 98 57.1
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.1e-20 107.1 79 70.9
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 1.9e-20 106.3 97 54.6
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 7.3e-20 104.4 75 66.7
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 6.4e-16 91.3 96 52.1
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.6e-14 86.7 70 64.3
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 4.6e-14 85.1 62 62.9
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.0e-13 82.4 78 43.6
Medtr4g113340 Medicago truncatula HOM05D004216 ORTHO05D004926 6.6e-13 81.3 76 57.9
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.9e-12 79.7 53 67.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 4.3e-12 78.6 61 62.3
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.6e-11 76.6 65 60.0
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-11 76.6 124 39.5
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 2.0e-09 69.7 289 22.5
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 2.0e-09 69.7 97 45.4
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.7e-08 66.6 48 66.7
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.9e-08 65.9 236 33.1
Nn6g35559 Nelumbo nucifera HOM05D002132 ORTHO05D002168 8.4e-08 64.3 287 21.6
Os08g0398700 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 1.6e-06 60.1 289 21.5
MBI05_g21324_MAGBIO Magnolia biondii HOM05D002132 ORTHO05D002168 2.1e-06 59.7 291 22.0
FAN27G1082 Fragaria x ananassa HOM05D002132 ORTHO05D002168 2.7e-06 59.3 302 22.2
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 2.7e-06 59.3 38 65.8
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 3.5e-06 58.9 47 57.4
MELO3C016894.2 Cucumis melo HOM05D002132 ORTHO05D002168 6.0e-06 58.2 292 21.9


User provided reference genes

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