Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 8.4e-304 1046.6 684 100.0
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 2.2e-267 925.6 684 92.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.4e-258 894.4 686 89.1
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.4e-234 814.7 701 81.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.5e-231 805.8 686 82.4
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-218 763.8 680 78.4
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.6e-217 758.4 679 77.3
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.7e-216 756.5 681 77.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.3e-216 756.1 679 76.4
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 4.8e-214 748.4 677 74.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 9.0e-213 744.2 678 77.3
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.6e-212 742.7 676 78.4
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 9.9e-212 740.7 672 76.8
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 9.9e-212 740.7 683 75.1
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.1e-210 737.3 680 76.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 7.1e-210 734.6 676 74.4
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.6e-209 731.9 684 74.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 7.9e-209 731.1 679 76.4
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.7e-208 729.9 684 76.6
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.6e-208 728.0 684 72.8
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-207 727.2 684 76.5
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.5e-207 726.9 636 81.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.3e-207 725.3 678 77.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 4.3e-207 725.3 682 76.7
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.3e-207 724.5 682 76.7
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.4e-205 719.5 682 72.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.4e-205 719.5 679 77.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.4e-205 719.5 679 76.9
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.1e-205 719.2 684 69.9
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 4.0e-205 718.8 675 73.0
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.9e-205 718.0 674 77.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 6.9e-205 718.0 682 72.0
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.4e-204 715.7 685 72.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-203 713.8 677 73.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.2e-203 713.0 680 75.7
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.2e-203 713.0 680 66.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.1e-202 710.7 678 76.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.2e-202 709.1 676 78.1
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 4.2e-202 708.8 676 73.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 4.2e-202 708.8 680 77.1
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 5.5e-202 708.4 665 76.7
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.2e-201 707.2 676 71.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 7.9e-201 704.5 690 76.5
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.8e-200 703.4 706 66.6
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.0e-200 702.6 674 73.0
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 8.7e-200 701.0 700 74.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-199 699.9 681 71.5
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.5e-199 699.5 676 70.9
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.5e-199 699.5 661 76.6
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.5e-199 699.5 683 71.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 5.6e-199 698.4 678 71.5
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 7.4e-199 698.0 693 70.3
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 9.6e-199 697.6 688 70.9
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.6e-198 696.8 676 74.4
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.8e-198 696.0 658 72.9
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.8e-198 695.3 684 76.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 4.0e-197 692.2 676 73.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 9.0e-197 691.0 679 71.6
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.0e-196 689.9 676 73.2
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 5.8e-196 688.3 666 73.1
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 5.8e-196 688.3 688 70.1
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.7e-195 686.8 666 74.6
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.1e-194 684.1 675 74.1
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.4e-194 683.7 677 72.4
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 5.5e-194 681.8 676 68.5
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.6e-193 680.2 675 74.1
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.0e-192 677.6 669 70.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.3e-192 677.2 675 75.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.8e-192 676.8 686 73.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-191 673.7 671 69.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-191 673.3 671 69.6
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.9e-191 673.3 669 69.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.3e-191 672.5 685 66.0
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.3e-191 672.2 680 69.3
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 9.6e-191 671.0 667 70.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 3.7e-190 669.1 671 69.3
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 3.7e-190 669.1 671 69.3
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 6.3e-190 668.3 661 69.9
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.4e-189 667.2 671 69.2
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.1e-189 665.6 654 70.5
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.1e-189 665.6 661 69.7
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.3e-189 665.2 669 69.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.2e-188 664.1 686 69.2
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 3.4e-188 662.5 680 69.4
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 3.4e-188 662.5 678 73.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 7.6e-188 661.4 722 62.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.0e-187 661.0 670 68.7
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.9e-187 659.4 684 69.0
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.1e-186 657.5 679 73.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.1e-186 657.5 667 63.7
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.4e-186 657.1 573 77.8
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.9e-186 656.8 651 73.0
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.5e-186 655.2 680 68.4
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.0e-184 649.4 655 69.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.9e-184 649.0 658 68.5
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.5e-183 647.1 623 73.4
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.3e-182 644.0 572 71.3
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 2.8e-182 642.9 665 72.8
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 5.3e-181 638.6 653 66.5
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.6e-180 636.3 656 68.1
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-178 630.9 605 76.2
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.7e-176 621.7 558 74.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 5.9e-172 608.6 653 67.5
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 5.5e-170 602.1 680 68.4
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.0e-168 596.3 668 62.6
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.9e-168 595.9 584 74.0
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.2e-166 588.2 654 56.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.1e-165 587.8 533 82.0
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.0e-163 581.3 681 63.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.4e-160 570.9 654 64.5
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 2.2e-155 553.5 529 75.8
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.9e-154 550.4 679 68.6
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.4e-149 534.3 537 75.2
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 7.0e-149 531.9 602 63.3
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.2e-143 514.6 642 56.4
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.7e-142 510.8 734 62.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 3.0e-136 490.0 676 52.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 6.8e-136 488.8 530 71.1
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.7e-134 484.2 615 55.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 2.7e-132 476.9 508 74.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 7.3e-130 468.8 524 63.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.0e-124 450.7 630 52.9
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.8e-108 395.6 515 57.5
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.8e-105 387.1 260 73.8
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.4e-102 375.6 303 66.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.1e-100 370.9 303 67.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.3e-98 363.2 482 65.8
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.1e-97 360.9 459 46.0
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 5.3e-96 356.3 319 69.9
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.4e-88 331.6 476 59.2
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 7.6e-87 325.9 225 84.0
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 9.6e-74 282.3 285 88.1
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.8e-72 278.1 292 52.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-65 255.4 185 69.2
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-65 255.4 286 52.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.1e-64 252.3 322 69.9
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 5.3e-64 250.0 215 81.4
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.0e-62 245.7 248 50.8
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.8e-62 243.8 292 51.7
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.2e-53 214.2 303 47.9
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.1e-52 211.5 138 73.9
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 4.7e-52 210.3 296 44.3
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.5e-47 193.7 289 78.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.2e-45 187.6 111 83.8
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 8.0e-44 183.0 219 45.2
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 5.2e-43 180.3 111 81.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.2e-39 169.1 87 88.5
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 3.5e-39 167.5 167 55.1
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.3e-38 165.6 186 51.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-33 149.1 322 54.3
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-28 132.1 131 49.6
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-24 119.4 97 66.0
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-24 119.4 97 67.0
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.8e-24 118.6 106 61.3
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.1e-24 117.9 94 66.0
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 8.6e-22 109.8 587 30.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 8.9e-19 99.8 530 30.4
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-17 95.9 69 62.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 4.9e-17 94.0 176 37.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 4.3e-13 80.9 158 34.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 9.5e-13 79.7 60 56.7
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.6e-12 79.0 198 27.8
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.8e-12 78.2 66 59.1
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 6.2e-12 77.0 67 55.2
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.2e-11 73.9 64 54.7
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 2.0e-10 72.0 54 55.6
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 5.8e-10 70.5 122 36.9
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 7.5e-10 70.1 168 31.5
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.4e-08 63.9 53 60.4
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 6.0e-07 60.5 44 54.5
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.3e-06 59.3 53 54.7
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 1.7e-06 58.9 50 56.0
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.9e-06 57.8 65 43.1
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 5.0e-06 57.4 39 61.5
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 5.0e-06 57.4 51 51.0


User provided reference genes

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