Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 2.4e-148 528.9 279 100.0
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.4e-124 449.1 256 91.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 4.6e-75 285.4 217 64.1
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 4.6e-75 285.4 243 61.3
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 6.1e-75 285.0 219 63.9
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 6.7e-74 281.6 220 66.8
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 8.8e-74 281.2 229 64.6
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 9.7e-73 277.7 222 64.0
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 3.7e-72 275.8 237 60.3
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.1e-71 272.7 224 61.6
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 6.9e-71 271.6 219 61.6
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 6.9e-71 271.6 219 61.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.2e-70 270.8 212 60.8
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.4e-70 269.2 212 60.8
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 4.5e-70 268.9 239 57.3
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.9e-70 268.5 233 61.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.3e-69 267.3 215 63.7
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.7e-69 266.9 227 62.6
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.2e-69 266.5 212 60.4
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 6.5e-69 265.0 234 58.1
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 5.5e-68 261.9 228 64.0
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.2e-67 260.8 239 57.7
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.6e-67 260.4 212 62.7
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 2.1e-67 260.0 220 59.5
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 2.7e-67 259.6 227 59.5
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 4.7e-67 258.8 218 60.6
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.0e-66 256.1 238 55.5
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 1.1e-65 254.2 234 56.8
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 2.0e-65 253.4 235 56.6
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 3.3e-65 252.7 219 57.1
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.7e-64 250.4 212 56.1
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 2.2e-64 250.0 245 55.9
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.7e-64 249.2 232 56.9
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 3.7e-64 249.2 268 53.4
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 6.3e-64 248.4 215 62.3
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 7.0e-63 245.0 231 55.4
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.6e-62 243.0 222 57.7
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 5.9e-62 241.9 218 58.7
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.3e-61 240.7 244 54.9
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.3e-61 240.7 224 50.9
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.7e-61 240.4 219 53.0
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.7e-61 240.4 211 55.5
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.7e-61 240.4 217 57.1
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 2.2e-61 240.0 219 53.4
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 2.9e-61 239.6 226 51.3
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 2.9e-61 239.6 226 55.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 2.9e-61 239.6 233 53.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 3.8e-61 239.2 240 52.5
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 6.5e-61 238.4 235 56.2
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 8.5e-61 238.0 223 55.6
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.5e-60 237.3 242 49.6
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.5e-60 237.3 212 60.4
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.9e-60 236.9 238 52.9
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 2.5e-60 236.5 224 51.3
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 2.5e-60 236.5 224 50.0
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 2.5e-60 236.5 248 49.6
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.2e-60 236.1 214 57.5
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 4.2e-60 235.7 209 57.9
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 5.5e-60 235.3 224 49.6
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 5.5e-60 235.3 224 49.6
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 9.4e-60 234.6 238 52.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 2.7e-59 233.0 217 52.1
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.7e-59 233.0 238 54.6
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 2.7e-59 233.0 213 54.0
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 3.6e-59 232.6 202 57.9
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.6e-59 232.6 243 51.0
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 6.1e-59 231.9 218 50.9
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 6.1e-59 231.9 213 56.3
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 8.0e-59 231.5 213 56.8
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 1.0e-58 231.1 218 54.6
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 2.3e-58 229.9 223 49.8
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 3.0e-58 229.6 235 51.9
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 5.7e-57 225.3 227 52.0
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 9.7e-57 224.6 219 50.2
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.3e-56 224.2 243 48.6
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 5.3e-55 218.8 230 53.0
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 4.0e-50 202.6 247 46.2
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 8.8e-50 201.4 226 49.1
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.5e-49 200.7 226 49.1
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 8.3e-48 194.9 155 61.9
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 1.8e-47 193.7 235 45.1
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 3.1e-47 193.0 333 38.1
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 5.4e-47 192.2 232 46.1
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 7.0e-47 191.8 180 52.8
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 9.1e-47 191.4 217 48.4
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 5.5e-44 182.2 173 55.5
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 1.4e-42 177.6 199 48.2
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 8.8e-42 174.9 212 41.5
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 1.2e-41 174.5 233 41.6
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.5e-41 174.1 234 41.5
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 2.0e-41 173.7 212 43.4
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 1.2e-38 164.5 218 40.4
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 5.6e-36 155.6 153 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 2.3e-34 150.2 176 43.8
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 3.4e-33 146.4 178 45.5
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.4e-33 146.0 412 27.9
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 5.7e-33 145.6 144 53.5
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.3e-32 144.4 225 39.1
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.2e-32 143.7 127 61.4
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 1.8e-31 140.6 174 48.9
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 6.6e-29 132.1 97 64.9
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 5.6e-28 129.0 158 43.7
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 2.0e-25 120.6 140 52.1
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 5.0e-21 105.9 217 31.3
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 3.4e-09 66.6 54 48.1
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.3e-08 64.7 126 32.5
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 3.2e-07 60.1 49 51.0
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 2.7e-06 57.0 127 32.3


User provided reference genes

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