Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.3e-45 186.0 96 100.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.3e-40 169.5 94 92.6
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 3.3e-36 154.8 93 83.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 9.5e-36 153.3 97 81.4
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 9.5e-36 153.3 81 97.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.1e-35 152.1 89 83.1
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.1e-35 152.1 85 88.2
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.6e-35 151.4 88 84.1
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.7e-35 151.0 89 84.3
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 6.1e-35 150.6 89 84.3
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.1e-35 150.6 87 85.1
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 6.1e-35 150.6 93 80.6
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.1e-35 150.6 88 84.1
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 8.0e-35 150.2 84 88.1
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.0e-34 149.8 88 85.2
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.0e-34 149.8 88 85.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.0e-34 149.8 93 80.6
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.0e-34 149.8 84 88.1
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.4e-34 149.4 83 88.0
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.4e-34 149.4 96 81.2
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.8e-34 149.1 93 80.6
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.3e-34 148.7 96 80.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.3e-34 148.7 84 89.3
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.1e-34 148.3 87 82.8
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 4.0e-34 147.9 91 81.3
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.2e-34 147.5 91 81.3
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.8e-34 147.1 96 80.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.8e-34 147.1 96 80.2
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.9e-34 146.7 85 85.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 8.9e-34 146.7 93 76.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.9e-34 146.7 93 78.5
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.2e-33 146.4 92 77.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.5e-33 146.0 85 85.9
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.5e-33 146.0 96 79.2
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.4e-33 144.4 87 80.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 4.4e-33 144.4 87 81.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 5.8e-33 144.1 85 83.5
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 9.8e-33 143.3 98 76.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 9.8e-33 143.3 92 78.3
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.3e-32 142.9 87 81.6
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.7e-32 142.5 85 84.7
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.7e-32 142.5 93 76.3
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 2.2e-32 142.1 97 76.3
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-32 141.7 97 74.2
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.9e-32 141.7 85 81.2
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.7e-32 141.4 91 78.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 3.7e-32 141.4 99 74.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 3.7e-32 141.4 76 96.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.7e-32 141.4 84 79.8
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.3e-32 140.2 93 76.3
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.1e-31 139.8 91 75.8
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.1e-31 139.8 97 73.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.4e-31 139.4 84 78.6
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.4e-31 139.4 90 77.8
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.4e-31 139.4 88 76.1
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.9e-31 139.0 84 79.8
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.9e-31 139.0 95 75.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.4e-31 138.7 82 84.1
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.4e-31 138.7 85 80.0
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.4e-31 138.7 80 86.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.4e-31 138.7 80 86.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-31 138.7 80 86.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.2e-31 138.3 85 78.8
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.2e-31 138.3 83 79.5
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.2e-31 138.3 91 78.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 5.4e-31 137.5 83 78.3
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 9.2e-31 136.7 84 76.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-30 136.3 83 75.9
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.2e-30 136.3 89 75.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.5e-30 134.8 84 78.6
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.0e-30 134.0 78 85.9
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 6.0e-30 134.0 85 74.1
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 6.0e-30 134.0 96 70.8
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.0e-30 134.0 78 87.2
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 7.8e-30 133.7 96 71.9
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.8e-30 133.7 78 85.9
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.8e-30 133.7 78 85.9
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.8e-30 133.7 78 85.9
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.0e-29 133.3 82 85.4
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.0e-29 133.3 82 78.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.7e-29 132.5 85 76.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 3.0e-29 131.7 88 79.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.9e-29 131.3 91 78.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.0e-29 131.0 81 80.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.0e-29 131.0 80 78.8
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.6e-29 130.6 89 71.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.6e-29 130.6 89 71.9
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 6.6e-29 130.6 83 77.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 6.6e-29 130.6 78 83.3
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 91 68.1
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 91 68.1
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 91 68.1
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 91 68.1
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.5e-28 129.4 84 72.6
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.5e-28 129.4 89 71.9
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.9e-28 129.0 89 71.9
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-28 129.0 91 69.2
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.9e-28 129.0 89 70.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.5e-28 128.6 82 78.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.5e-28 128.6 89 69.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.5e-28 128.6 89 70.8
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-28 128.6 89 70.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.5e-28 128.6 89 70.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.5e-28 128.6 89 70.8
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.5e-28 128.6 76 81.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 2.5e-28 128.6 86 77.9
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 5.6e-28 127.5 77 84.4
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.3e-28 127.1 84 77.4
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 9.5e-28 126.7 82 76.8
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 9.5e-28 126.7 82 79.3
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 9.5e-28 126.7 87 71.3
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.2e-27 126.3 75 84.0
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 104 70.2
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.6e-27 125.9 89 70.8
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-27 125.6 87 69.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.1e-27 125.6 73 89.0
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-27 125.2 87 69.0
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-27 125.2 87 69.0
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.8e-27 125.2 78 80.8
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.6e-27 124.8 84 76.2
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.6e-27 124.8 78 76.9
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 4.0e-26 121.3 78 80.8
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 6.8e-26 120.6 84 67.9
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.6e-25 118.6 76 81.6
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.4e-25 117.9 89 68.5
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.4e-25 117.9 89 68.5
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.4e-25 117.9 89 68.5
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 74 79.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.7e-24 114.8 76 76.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 9.2e-23 110.2 80 72.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.2e-19 99.8 78 64.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.2e-19 99.8 73 71.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 2.8e-19 98.6 58 79.3
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.4e-18 96.3 78 64.1
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 4.0e-18 94.7 79 57.0
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.2e-17 93.2 67 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.7e-16 89.4 77 59.7
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 3.7e-16 88.2 87 56.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.9e-15 85.9 89 52.8
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.2e-15 85.1 48 81.2
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.5e-14 81.6 52 78.8
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.5e-14 81.6 52 78.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 8.6e-13 77.0 83 45.8
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 4.3e-12 74.7 39 92.3
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 5.6e-12 74.3 51 70.6


User provided reference genes

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