Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 0.0e+00 1166.8 588 100.0
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 0.0e+00 1104.4 667 85.3
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 1.3e-281 972.6 591 81.9
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.9e-280 968.8 590 82.2
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 4.3e-280 967.6 590 82.0
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 4.3e-280 967.6 590 82.2
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 4.7e-279 964.1 586 81.7
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 6.2e-279 963.8 588 81.1
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 9.2e-275 949.9 587 80.2
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 3.9e-273 944.5 589 80.6
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 6.6e-273 943.7 578 80.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.2e-271 939.5 588 79.8
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 1.6e-271 939.1 586 78.8
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.2e-269 932.9 588 78.1
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.5e-269 932.6 588 77.9
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.5e-269 932.6 588 78.6
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 3.4e-269 931.4 588 78.4
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 4.9e-268 927.5 556 81.5
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.9e-267 925.6 589 80.1
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 3.2e-267 924.9 591 80.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 9.3e-267 923.3 580 78.4
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 5.1e-265 917.5 586 76.5
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.3e-263 912.9 561 79.1
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.1e-263 912.1 617 74.4
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.1e-263 912.1 588 76.0
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 6.2e-263 910.6 593 75.5
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 2.4e-262 908.7 588 76.5
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 5.3e-262 907.5 577 76.8
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 9.0e-262 906.7 564 77.8
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.2e-261 906.4 572 77.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 3.8e-260 901.4 586 76.1
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 4.9e-260 901.0 538 81.4
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.4e-259 899.4 612 74.7
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.9e-259 899.0 602 74.3
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 4.2e-259 897.9 578 76.5
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 5.4e-259 897.5 558 78.1
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 7.1e-259 897.1 592 75.0
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.1e-258 895.6 568 75.5
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.1e-258 895.6 592 75.0
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 3.0e-257 891.7 590 73.7
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 3.0e-257 891.7 578 76.0
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 3.9e-257 891.3 565 76.3
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 8.7e-257 890.2 555 78.0
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 7.4e-256 887.1 586 74.7
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 3.7e-255 884.8 559 76.9
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.1e-254 883.2 565 76.8
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 3.1e-254 881.7 594 74.4
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 4.0e-254 881.3 561 77.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 4.9e-252 874.4 589 73.9
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 7.9e-250 867.1 564 76.2
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.3e-249 866.3 593 72.2
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.3e-249 865.5 593 72.2
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 5.6e-248 860.9 577 74.4
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 2.1e-247 859.0 652 68.4
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 8.2e-247 857.1 588 70.7
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 2.4e-246 855.5 590 72.5
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 1.5e-245 852.8 588 70.9
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 2.6e-245 852.0 588 71.1
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.6e-245 852.0 588 71.1
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 2.6e-245 852.0 588 70.4
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 3.4e-245 851.7 588 70.7
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 7.6e-245 850.5 494 85.0
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.3e-244 849.7 588 70.7
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 3.8e-244 848.2 588 70.7
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 4.9e-244 847.8 588 69.9
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 1.9e-243 845.9 588 70.7
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 2.7e-242 842.0 588 70.4
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 8.7e-241 837.0 540 74.6
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 3.3e-240 835.1 503 79.9
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 6.9e-238 827.4 559 73.9
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 7.9e-234 813.9 592 69.4
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.4e-233 813.1 556 73.0
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.7e-231 806.2 559 70.5
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 2.2e-231 805.8 512 79.5
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 1.8e-230 802.7 530 75.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 7.7e-229 797.3 544 71.1
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 2.2e-228 795.8 559 71.2
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.9e-227 792.7 589 68.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.7e-225 784.3 593 67.3
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 4.8e-223 778.1 557 65.9
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.1e-222 776.9 551 69.5
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 6.1e-218 761.1 584 67.6
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 3.0e-217 758.8 586 69.1
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 2.2e-215 752.7 512 72.9
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 7.2e-211 737.6 486 75.1
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.7e-207 725.3 539 69.0
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.7e-205 719.2 472 72.2
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.2e-197 693.7 457 77.5
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 5.6e-187 658.3 571 61.1
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 8.9e-185 651.0 544 56.6
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 6.4e-183 644.8 549 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.2e-174 615.9 521 57.6
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 5.4e-166 588.6 565 58.9
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.1e-165 586.6 335 85.7
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 8.1e-162 574.7 383 73.4
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.7e-157 559.7 319 82.8
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 3.2e-150 536.2 309 80.6
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.3e-148 530.8 575 52.5
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 2.8e-146 523.1 345 71.3
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 6.4e-143 511.9 455 59.8
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 8.4e-143 511.5 384 65.6
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 1.1e-134 484.6 411 61.3
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.3e-132 476.9 575 43.7
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 4.0e-129 466.1 308 75.0
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 1.8e-108 397.5 365 54.8
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 3.2e-102 376.7 206 87.9
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.6e-96 357.8 627 34.9
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.2e-90 337.4 235 72.3
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.1e-89 335.1 246 67.9
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.2e-56 225.3 140 73.6
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.7e-55 221.5 160 65.6
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 5.1e-47 193.4 130 73.1
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 3.4e-43 180.6 149 55.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.2e-42 177.9 158 57.0
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.5e-38 165.2 99 74.7
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 4.9e-34 150.2 160 54.4
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 3.9e-31 140.6 138 52.2
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.1e-25 122.5 78 80.8
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 9.3e-25 119.4 69 76.8
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 4.6e-24 117.1 100 51.0
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 3.9e-23 114.0 64 75.0
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.7e-18 98.6 105 52.4
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 1.3e-13 82.4 85 44.7
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.1e-13 81.6 73 63.0
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.1e-12 77.8 42 81.0
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 7.6e-11 73.2 77 57.1
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 6.5e-10 70.1 82 48.8
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 7.9e-08 63.2 40 75.0
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 1.5e-06 58.9 35 68.6


User provided reference genes

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